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9 protocols using pxi imager

1

Tau Phosphorylation by MARK4 Kinase

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Dot blots were conducted using recombinant human Tau (Anaspec, #AS-55556) and recombinant human MARK4 (Abcam, #ab105211) and Mark/Par-1 inhibitor #39621 (Millipore Sigma, #454870). All recombinant proteins were dissolved in 25 mM Tris-HCl, pH 7.5. To measure tau phosphorylation recombinant human tau (15 μM) with or without recombinant human Mark4 (0.30 μM) were combined with the following: 5.0 mM ß-Glycerol phosphate; 12 mM MgCl2; 0.1 mM Na Orthovanadate; 2.0 mM Dithiothreitol; 50 μM ATP; 25 mM Tris-HCl, pH 7.5, and incubated at 30 °C. Four μL of each mixture were placed onto the membrane using a fine pipette tip. After all time points were collected, the membrane was blocked with 2.5% milk in TBS-T on an orbital shaker for 2 h at room temperature. The membrane was incubated overnight with the primary antibody to p-tau Ser262 (ThermoFisher Scientific, #OPA1–03142) diluted 1:1000 in 2.5% milk) at 4 °C. After three 5 min washes with TBS-T, the membrane was incubated for 1 h at room temperature with HRP-conjugated anti-Rb secondary antibody (Invitrogen, Cat#65–6120, diluted 1:10,000 in 2.5% milk). After three 5 min washes in TBS-T, the membrane was incubated with ECL reagent for 1 min and placed in a small plastic bag, and imaged with a Syngene PXi imager (MD).
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2

Gelatin zymography for MMP2 detection

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Female mice (n=4 mice/genotype) were infused with AngII (1,000 ng/kg/min) for 24 hours, aortic protein (10 μg) was extracted and resolved using SDS-PAGE (7.5%) polymerized in the presence of gelatin (2 mg/ml) to detect MMP activity. Gels were washed with 2.5% Triton X-100 (1 hr) followed by distilled water (30 min), and incubated overnight (37°C) in Tris buffer containing 10 mM calcium chloride and 0.02% sodium azide. Gels were stained with Coomassie Brilliant Blue for 3 hours and destained using distilled water. Gel images were captured using a Syngene PXi imager; the unstained, translucent digested regions represented areas of MMP2 activity.
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3

Immunoblot Assay for Protein Analysis

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For immunoblot assay, cells were first subjected to lysis in NuPAGE LDS Sample Buffer. Total proteins content from every samples was measure using Pierce BCA Protein Assay Kit according to the manufacturer’s recommendations. Samples lysates were then loaded onto NuPAGE 4–12% Bis-Tris Protein Gels (10, 12, or 15 wells). After electrophoresis, proteins were transferred to nitrocellulose membranes. The transblotted membranes were blocked for 1 h and then probed with appropriate primary antibodies (dilution as recommended by manufacturers) overnight at 4 °C. Next, the membranes were washed three times for a total of 30 min and then incubated with secondary antibodies at room temperature for 1 hr. After another three washes, proteins were detected using SuperSignal West Pico PLUS chemiluminescent Substrate, PXi imager (Syngene), and GeneSys software (Syngene, Paris, France), according to the manufacturer’s manual. Proteins expression were quantified using GeneTool software (Syngene) and normalized to their corresponding loading control. Antibodies for immunoblotting were purchased from the following sources: FASN (#3180S) from Cell Signaling Technology; Actin (MAB1501) from Millipore; IDH1 R132H (DIA-H09) from Dianova. HRP conjugate anti-rabbit (W4011) and anti-mouse (W4021) secondary antibodies were purchased from Promega (Charbonnières les Bains, France).
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4

Quantifying pERK1/2 in Lung Homogenates

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Protein from lung homogenates (30 μg protein, denatured, phosphorylase treated) were run on Tris-glycine 10% (Bio-Rad, USA) gel and transferred to 0.45μm nitrocellulose cells (Bio-Rad, USA). Membranes were incubated with rabbit anti-pERK1/2 (MAB10108) 1:250 (R&D systems, USA) or rabbit anti-β actin (PA1-21167) 1:250 (ThermoScientific, USA) overnight then IgG-HRP secondary antibodies were applied (1:10000). Membranes were developed with Immobilon HRP Substrate (Millipore, USA), imaged on PXi Imager (Syngene, USA), and quantified (ImageJ, USA). pERK/ β actin was analyzed, with results reported as fold increase over control.
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5

Analyzing IL-6 and MCPIP1 in OA Chondrocytes

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After treatments, OA chondrocytes were harvested, washed with cold PBS and lysed in ice-cold protein lysis buffer (50 mM Tris pH 7.6, 400 mM NaCl, 0.5% NP-40, 1 mM PMSF and 1 × protease inhibitor cocktail (Roche) as described previously (29 (link), 30 (link)). Lysates were clarified by centrifugation (15000g for 15 min at 4°C) and the supernatant was analyzed immediately or stored at −80°C. Equivalent amounts of lysate protein (25 µg) were resolved by 10% SDS–PAGE and transferred to a PVDF membrane (Hybond P, Amersham Biosciences, Piscataway, New Jersey) and the blots were incubated with diluted anti-IL-6 (1:1000), or anti-MCPIP1 (1:1000) or anti-β-Actin (1:5000) primary antibodies in TBST overnight at 4°C. Blots were then incubated with horseradish peroxidase-conjugated secondary antibody and the antibody reactive proteins were visualized and analyzed using the Syngene Pxi imager and the Syngene Image analysis software respectively.
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6

Western Blot Analysis of GIMAP Protein Family

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Cells were lysed in radioimmunoprecipitation assay buffer (150 mM NaCl, 5 mM EDTA [pH 8.0], 50 mM Tris [pH 8.0], 1.0% NP-40, 0.5% sodium deoxycholate, 0.1% SDS) complete with protease and phosphatase inhibitor cocktails, heated at 95°C for 5 min with reducing reagent, and run on a Bis-tris protein gel. Primary antibodies used were anti-β actin (clone 2D1D10; GenScript), anti-HA tag (clone 6E2; Cell Signaling Technologies), anti-LC3 rabbit polyclonal (cat no. L8919; Sigma-Aldrich), anti-human GIMAP1 (PA5-60858; Thermo Fischer Scientific), anti-human GIMAP4 (HPA019137; Sigma-Aldrich), anti-human GIMAP7 (HPA020268; Sigma-Aldrich), and anti-β tubulin Dylight 680 (clone BT7R; Life Technologies). Anti-human and anti-mouse GIMAP6 antibodies (MAC445 and MAC436, respectively), anti-human GIMAP2 antibody, and anti-human GIMAP8 antibody were sourced as previously described (Pascall et al., 2013 (link)). Secondary antibodies used were IRDye 800CW Donkey anti-Mouse (Murine) IgG, IRDye 800CW Donkey anti-Rabbit IgG, and IRDye 800CW Goat anti-Rat IgG (all from Li-COR Biosciences). Membranes were imaged using the Odyssey CLx Imaging System (LI-COR Biosciences) or PXi imager (Syngene). Data were analyzed using Image Studio Lite.
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7

Quantification of Autophagy Markers

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After treatments, OA chondrocytes were harvested, washed with cold PBS and lysed in ice-cold protein lysis buffer (50 mMTris pH 7.6, 400 mMNaCl, 0.5% NP-40, 1 mM PMSF and 1X protease inhibitor cocktail (Roche) as described previously[Haseeb et al., 2013 (link)]. Lysates were centrifuged (15000g for 15 min at 4°C) and the supernatant was used for estimation of protein. Equivalent amounts of lysate protein (20µg) were resolved by 12% SDS–PAGE and transferred to a PVDF membrane (Bio-Rad, USA) and the blots were incubated with diluted anti-LC3 (1:1000), or anti-Beclin-1 (1:1000) or anti-β-Actin (1:2000) primary antibodies in TBST overnight at 4°C. Blots were then incubated with horse radish peroxidase-conjugated secondary antibody and the antibody reactive proteins were visualized and analyzed using the Syngene Pxi imager and the Syngene Image analysis software respectively.
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8

Western Blot Analysis of Liver Proteins

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Liver tissue collected from overnight (16–18 h) fasted mice was homogenized in lysis buffer (20 mM Tris pH 6.8, 1% SDS, 10% Glycerol, 4 mM DTT) supplemented with Pierce protease (Thermo) and Pierce phosphatase inhibitor tablets (Thermo) then centrifuged for 10 min at 16,000 × g 4°C. The supernatant was collected, and protein concentration was determined by DC protein assay (BioRad). Twenty micrograms of total protein was added to Laemmli sample buffer containing 5% 2‐mercaptoethanol, heated to 95°C for 5 min, separated by SDS‐PAGE then electrotransferred to a 0.45 μm nitrocellulose membrane. Nonspecific binding was blocked with tris‐buffered saline containing 0.1% Tween‐20 (TBST) and 5% BSA for 1 h at room temperature. Membranes were probed with primary antibodies diluted in blocking buffer for 2 h at room temperature, washed briefly with TBST, then incubated with horseradish peroxidase‐conjugated secondary antibodies diluted in blocking buffer for 1 h at room temperature. Protein signals were developed using SuperSignal West Pico Plus chemiluminescent substrate (Thermo) and imaged using a SynGene PXi imager. Protein band density was quantified using NIH ImageJ software. Antibody information is provided in Table S1. Uncropped membranes are provided in supplement.
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9

Chondrocyte Protein Extraction and Western Blot Analysis

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After desired treatment chondrocytes were harvested, washed with PBS and lysed in ice-cold protein lysis buffer (50 mM Tris pH 7.6, 400 mM NaCl, 0.5% NP-40, 1 mM PMSF and 1x protease inhibitor cocktail (Roche, Mannheim, Germany) [17 (link), 29 (link)]. Lysates were clarified by centrifugation (15000g for 10 min at 4°C) and the supernatant was analyzed immediately or stored at −80°C. Equivalent amounts of proteins were resolved by 10% SDS–PAGE and transferred onto a PVDF membrane (Hybond P, Amersham Biosciences, Piscataway, New Jersey, USA). After blocking in 5% milk, membranes were incubated with anti-IL-6 (1:1000), anti-MCPIP1 (1:1000) or anti-β-Actin (1:5000) primary antibodies overnight at 4°C. To detect acetylated histone, cells were lysed in protein loading buffer (0.313 M Tris pH 6.8, 10%SDS, 40% glycerol, 0.05% bromophenol blue and 2% β-ME). Cells were sonicated three times for 10s each and separated on 12% SDS-PAGE. After blocking membranes were incubated with anti-Ac-H3 (1:1000), anti-Ac-H4 (1:1000), anti-H3 (1:1000) or anti-H4 (1:1000) antibodies overnight at 4°C. Every primary antibody incubation was followed by horseradish peroxidase-conjugated secondary antibody (1:5000). Western blots were visualized using Syngene Pxi imager. Quantification of immuno-reactive bands was performed using the Gene Tools Software (Syngene, Frederick, MD, USA).
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