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Ultra tmb substrate

Manufactured by Thermo Fisher Scientific
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Ultra-TMB substrate is a colorimetric substrate solution used in immunoassays to detect and quantify the presence of target analytes. It produces a blue color reaction when catalyzed by horseradish peroxidase (HRP), a commonly used enzyme label in such assays.

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33 protocols using ultra tmb substrate

1

Perlecan-Gliomedin Binding Assay

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Perlecan was coated onto the wells of high-binding Costar dishes at 5 µg/ml in 0.15 M sodium bicarbonate overnight at 4°C. An aliquot (7.5 µg in 35 µl) of perlecan was treated with heparinase (Seikigaku-Kogyo/Amsbio) at 37°C for 20 h with 25 mU before coating. Dishes were blocked for 1 h at room temperature with 3% BSA in 50 mM Tris, pH 7.4, 90 mM NaCl, and 1 mM CaCl2. Gliomedin-Fc protein was added to the perlecan-coated dishes at the indicated concentrations in blocking buffer and incubated for 1 h at room temperature. After washing off unbound protein, the bound species was detected with 1:5,000 anti–Fc-HRP (Thermo Fisher Scientific) and Ultra TMB substrate (Thermo Fisher Scientific). Absorbance was determined at 450 nM with a Spectra Fluor multichannel plate reader.
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2

Determination of DLL Protein Binding Affinity

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Recombinant His-tagged DLL1 and DLL4 (R&D Systems) or DLL3 produced from pEE12.4-hDLL3 as a His fusion protein in CHO cells were immobilized on high protein binding 96-well ELISA plates (Greiner Microlon) at 1 µg/ml in phosphate-buffered saline (PBS) overnight at 4°C. Plates were blocked with PBS plus 3% bovine serum albumin (BSA) and washed in PBS with 0.05%Tween 20 (PBST). Serial dilutions of SC16 or a human IgG1 isotype control in PBST containing 1% BSA (PBSTA) were added to the plate and incubated for 2 hours at room temperature (RT). After washing with PBST, a 1:2000 dilution of a donkey anti-human IgG horseradish peroxidase (HRP) conjugate (Jackson ImmunoResearch) in PBSTA was added to the plates for 1 hour. SC16 binding was visualized using Ultra-TMB substrate (Thermo Fisher Scientific), and plates were read at 450-nm absorbance.
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3

GRFT Measurement in Plasma and CVL Using ELISA

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Concentrations of GRFT in plasma and in CVLs collected using 10 ml of sterile normal saline were measured by a validated indirect sandwich ELISA. 96-well Immulon 2HB microplates (Thermo Scientific, Rockford, IL) were pre-coated with HIV-1BaL gp-120 (NIH Reagent Program Cat#49610, Germantown, MD). After blocking, the samples were added to the plate in duplicate. A goat anti-GRFT detection antibody (Pacific Immunology, Ramona, CA) was added and the mixture, followed by a rabbit anti-goat-HRP secondary antibody (Southern Biotech, Birmingham, AL). Ultra-TMB substrate (Thermo Scientific) was added followed by sulfuric acid (Thermo Scientific). Plates were washed and read on the Emax microplate reader (Molecular Devices, Sunnyvale, CA) at 450 nm (570 nm for reference) using the SoftMax Pro GxP 5.4.6 software (Molecular Devices). The lower limits of quantification (LLOQs) were 10 ng/mL and 1.25 ng/mL for plasma and CVL, respectively.
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4

GP-Specific NPC1 Binding ELISA

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NPC1 binding ELISAs were performed as described previously (4 (link)). Plates were coated with GP-specific monoclonal antibody (Mab) KZ52 (14 (link)) diluted to 2 μg/ml in phosphate-buffered saline (PBS). VSV-GP(WT) or VSV-GP(R64A) was normalized for GP content and then incubated at 37°C for 4 h in the presence of 500 μg/ml THL (Sigma-Aldrich, St. Louis, MO). The reaction was stopped by addition of 10 mM phosphoramidon. ELISA plates were blocked using PBS supplemented with 3% bovine serum albumin (PBSA; Thermo Fisher Scientific, Waltham, MA). THL-treated virus was added to blocked KZ52-coated plates and allowed to adsorb at 37°C for 1 h. After the plates were washed with 3% PBSA, a dilution series of FLAG-tagged NPC1-domain C was added and allowed to bind for 1 h at 37°C. Bound domain C was then detected using a horseradish peroxidase (HRP)-conjugated anti-FLAG antibody (Sigma-Aldrich, St. Louis, MO) and the Ultra-TMB substrate (Thermo Fisher Scientific, Waltham, MA). Half-maximal effective concentration (EC50) values were calculated from two independent experiments, each with three technical replicates.
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5

Quantifying Ebola Virus Attachment to NPC1

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Plates were coated with GP-specific mAb KZ52 (44 (link)) diluted to 2 μg/ml in phosphate-buffered saline (PBS). VSV-GP mutants were normalized for GP content and then incubated at 37°C for 1 h in the presence of 250 μg/ml thermolysin (Sigma-Aldrich, St. Louis, MO), before the addition of 10 mM phosphoramidon to stop the reaction. ELISA plates were blocked using PBS supplemented with 3% bovine serum albumin (PBSA) (Thermo Fisher Scientific, Waltham, MA). THL-treated virus was added to blocked KZ52-coated plates and allowed to adsorb at 37°C for 1 h. Following washing with 3% PBSA, a dilution series of FLAG-tagged NPC1 domain C (45 (link)) was added and allowed to bind for 1 h at 37°C. Bound domain C was then detected using a horseradish peroxidase (HRP)-conjugated anti-FLAG antibody (Ab) (Sigma-Aldrich, St. Louis, MO) and the Ultra-TMB substrate (Thermo Fisher Scientific, Waltham, MA). Fifty percent effective concentration (EC50) values were calculated using nonlinear regression of data from two independent experiments with three technical replicates each.
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6

Mouse Hepcidin Immunoassay Protocol

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Mouse hepcidin-1 monoclonal antibodies, Ab2B10 (capture), AB2H4-HRP (detection) and synthetic mouse hepcidin-25, were a generous gift from Amgen (Thousand Oaks, CA) 41 . High binding 96-well EIA plates (Corning) were coated overnight at room temperature with 50 μL/well of 3.6 μg/mL Ab2B10 in 0.2 M carbonate-bicarbonate buffer pH 9.4 (Pierce). Plates were washed twice with wash buffer (PBS, 0.5% Tween-20) and blocked for 45 minutes with 200 μL/well blocking buffer (PBS, 1% BSA, 1% normal goat serum, 0.5% Tween-20). Samples and standards were added and incubated 1 hour at room temperature. After four washes, plates were incubated an hour with 50 μL/well of 130 ng/mL AB2H4-HRP, washed 4 times then developed with 100 μL/well Ultra-TMB substrate (Thermo Scientific) for 30 minutes in the dark at room temperature. The reaction was stopped by adding 50 μL 2M sulfuric acid and the absorbance was measured at 450 nm. Serum Epo was measured using mouse Epo quantikine set (R&D Systems), according to the manufacturer’s instructions.
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7

Binding Assay of NPC1-GP Interaction

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Binding of GP to NPC1 domain C was performed as previously described (10 (link), 32 (link)). Briefly, high-binding 96-well ELISA plates (Corning) were coated with the anti-GP monoclonal antibody KZ52 (2 µg/ml in PBS) (21 (link)). Following a blocking step, either uncleaved or in vitro-cleaved GPCL pseudotypes were captured on the plate. Unbound GP was washed off, and serial dilutions of Flag-tagged purified soluble human NPC1 domain C (0 to 40 µg/ml) were added. Bound NPC1 domain C was detected by a horseradish-conjugated anti-Flag antibody (Sigma-Aldrich), using ultra-TMB substrate (Thermo Scientific). EC50s were calculated from binding curves generated by nonlinear regression analysis using GraphPad Prism software. Binding ELISAs were done in duplicate in at least two independent experiments. All incubation steps were done at 37°C for 1 h or at 4°C overnight.
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8

ELISA for α-DG-N Detection in Uterine Lavage

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A previously established ELISA for the detection of α-DG-N in uterine lavage was used [56 ]. In brief, half area 96-well plates were coated overnight at 4°C with 0.5 μg/ml of α-DG-N mAb (2A3, Sigma Aldrich) in 0.1 M sodium carbonate/bicarbonate buffer of pH 9.6 (Sigma Aldrich). The wells were then washed with PBS (137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4 and 1.8 mM KH2PO4) containing 0.05% Tween20 (PBS-T), and blocked with 1% BSA (Bovogen, VIC, Australia) in PBS for 90 min at 37°C. The wells were washed with PBS-T, incubated with recombinant α-DG-N as the standards or uterine lavage (undiluted) for 2 hr with gentle agitation. The wells were washed and incubated first with 3 μg/ml of biotinylated detection antibody (3B4, Creative Diagnostics, NY, USA) for 1 hr, then with poly streptavidin-HRP (Thermo Scientific, Waltham, MA, USA) at 1:25,000 dilution for 50 min with gentle agitation, and finally with ultra-TMB substrate (undiluted, Thermo Scientific) for 7–10 min in the dark at room temperature without agitation. The ELISA reaction was stopped with 1 M sulfuric acid (Banksia Scientific Company Pty Ltd, QLD, AUS) and the absorbance at 450 nm was measured (Envision Multilabel reader, PerkinElmer, Waltham, MA, USA). All washes and incubations were performed at room temperature.
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9

ELISA-Based VLP Antibody Assay

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EIA plates were coated with 0.25 μg/ml VLP in PBS before adding 2-fold serial dilutions of serum. The primary Ab incubation was followed by anti-human-IgG-HRP secondary Ab (GE Healthcare), and positive wells were color-developed with Ultra TMB substrate (Thermo Scientific). Plates were washed with PBS/0.05% Tween 20 (Thermo Scientific) between steps, and Ab dilutions were done in 5% Blotto/PBS/0.05% Tween 20. All incubations were done at room temperature. The percent maximum binding was calculated, sigmoidal dose–response curves fit to the data, and EC50 values determined using GraphPad Prism version 6.02 for Windows (GraphPad Software). All samples were tested in a minimum of two independent assays. EC50 titers below the lower limit of detection (100) were assigned a titer of 50.
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10

Aflibercept Expression Quantification in HeLa Cells

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HeLa cells (3 × 104 cells/well in a 96-well plate) were transduced with AAV2.aflibercept or AAV2.aflibercept.io2 at 1 × 103 vg/cell, 1 × 104 vg/cell or 1 × 105 vg/cell in triplicate. Supernatants were harvested 48h post-transduction and analyzed for aflibercept expression (each sample run in duplicate). Briefly, high-binding 96-well ELISA plates (Corning 96 well EIA/RIA plates, Cat# 3590) were coated overnight at 4°C with purified recombinant human VEGF165 (Shenandoah Biotechnology, Cat# 100–44) diluted in DPBS. The next day, excess VEGF165 was removed and wells were washed 4 times with 1x PBS followed by blocking for 1 h at 37°C with 5% BSA in PBS. Blocking solution was removed and HeLa cell supernatants and standards containing aflibercept were added to the wells and incubated for 1 h at 37°C. Following incubation, wells were washed 4 times with 1x PBS. Bound aflibercept was detected using a HRP-conjugated goat anti-human IgG, Fc-specific antibody (Thermo Fisher, Cat# A18829) and ultra TMB substrate (Thermo Fisher, Cat# 34028). A standard curve was prepared for each run using purified aflibercept (BOC Sciences, CAS 862111-32-8) of known concentration diluted in DMEM + 10% FBS.
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