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9 protocols using ab263947

1

Immunoblotting Analysis of IL-4 and PDAC-CM Induced Macrophage Polarization

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BMDMs and THP-1 cells were treated with IL-4 (MUS: Pepro Tech, 214–14; HUM: Pepro Tech, 200–04) or a 1:1 solution of PDAC-CM and complete medium containing 10% FBS for 48 h. NuPAGE™ LDS Sample Buffer (Invitrogen, NP0007) was directly added to the cell culture plate to lyse the cells on ice. The protein was heated in an iron bath at 70°C for 10 min, separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE), and electrotransferred to a polyvinylidene fluoride (PVDF) membrane (Merck Millipore). The main antibodies used in the research were CD206 (ab64693, Abcam), Arg-1 (93,668, CST), p-Akt (4060S, CST), Akt (4691S, CST), p-Stat6 (ab263947, Abcam), Stat6 (ab32520, Abcam), p-mTOR (5,536, CST), mTOR (2,983, CST), mouse IL4Rα (MAB530, R&D system), human IL4Rα (MAB230, R&D system), CSF1R (ab254357, Abcam), p-Stat3 (ab76315, Abcam), and Ym-1 (ab192029, Abcam). The protein bands were observed using an enhanced chemiluminescence (ECL) detection kit (P10100, NCM), and images were obtained using a chemiluminescence detection system (Bio–Rad).
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2

Protein Expression Analysis of Jejunal IECs

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Jejunal IECs were lysed in a RIPA buffer containing proteinase inhibitors and an OGA inhibitor. Protein extracts were separated on an SDS-PAGE gel, transferred to nitrocellulose membranes, and blotted with the indicated primary antibodies: OGT (ab96718, Abcam, Shanghai, China), O-GlcNAc (ab2739, Abcam), α-Tubulin (11224-1-AP, Proteintech, Wuhan, China), P-STAT6 (Y641) (ab263947, Abcam), and STAT6 (51073-1-AP, Proteintech). After incubation with HRP-conjugated secondary antibodies, the immune complexes were detected using the ECL detection reagents (Beyotime, Shanghai, China).
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3

Immunofluorescent and Immunohistochemical Analysis of Mast Cells

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For immunofluorescent staining, sections of lungs or cells were incubated with the antibody against mast cell tryptase (ab2378, Abcam, UK), Tespa1 (R1309-16, HuaAn Biotechnology, China), p-STAT6 (ab263947, Abcam, UK) and DAPI (4ʹ,6-diamidino-2-phenylindole, Life Technologies,), and images were obtained by using a confocal laser scanning microscope (LSM 880, Zeiss). The protein expression levels were analyzed using Image J.1.44 software.
For immunohistochemical staining, the slides were incubated with 3% H2O2 for 10 min after dewaxing, and then washed with PBS for 5 min at room temperature. Antigen retrieval was performed in citrate buffer (pH 6.0) by microwave heating, and blocking was performed with 10% non-immune goat serum for 30 min after cooling. The slides were incubated with an antibody against mast cell tryptase (ab2378, Abcam, UK) overnight at 4 ℃. After rinsing with PBS, the sections were incubated with the HRP-conjugated secondary antibody (Maixin, Fuzhou, China) for 30 min at room temperature. Hematoxylin was applied as a counterstain. Eight fields were randomly selected for the quantification of positive cells in every sample, as previously described [19 (link)].
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4

Protein Extraction and Western Blot Analysis

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Samples were homogenized in lysis buffer (pH 7.4) containing a protease inhibitor cocktail (HY-K0010, MedChenExpress), phosphatase inhibitor cocktail III (HY-K0023, MedChenExpress), 50 mM Tris, 150 mM NaCl, 5 mM ethylenediaminetetraacetic acid (EDTA), and 0.5% NP-40 (Sigma-Aldrich). The protein concentration was determined using a BCA Protein Assay kit (Tiangen Biotech). Sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) was performed, and the samples were blotted onto a polyvinylidene fluoride (PVDF) membrane. Antibodies against DPP4 (ab28340, Abcam), F4/80 (28463-1-AP, Proteintech), CD206 (18704-1-AP, Proteintech), p44/42 MAPK (Erk1/2) (137F5) rabbit mAb (4695, Cell Signaling Technology), Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (9101, Cell Signaling Technology), signal transducer and activator of transcription 6 (STAT6) (ab32520, Abcam), and Phospho-STAT6 (phospho Y641) (ab263947, Abcam) were used at a dilution of 1:2000. Secondary antibody binding and detection were performed according to standard protocols using an enhanced chemiluminescence (ECL) detection reagent (Bio-Rad).
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5

Hippocampal Protein Expression Analysis

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Western blot analysis was performed following the protocol from previous studies (Fan Y. et al., 2015 (link)). The anesthetized rats were transcardially perfused with saline. The brains were removed, and the hippocampi were dissected. Lysis buffer was prepared by RIPA and PMSF according to a ratio of 100:1, and one tablet phosphatase inhibitor (4906837001, Roche, Switzerland) was added to every 10 mL lysis buffer. The tissues were homogenized in lysis buffer (containing phosphatase inhibitor). After cracking and centrifugation, the supernatant was collected. Equal amounts of total proteins were resolved by SDS-PAGE and transferred on to a nitrocellulose membrane. The membranes were incubated overnight at 4°C with the following primary antibodies: anti-STAT6 (ab217998, 1:1,000, Abcam, USA), anti-pSTAT6 (ab263947, 1:1,000, Abcam, USA), anti-TGF-β1 (ab92486, 1:1,000, Abcam, USA), anti-IL-10 (DF6894, 1:500; Affinity, USA), anti-IL-1β (AF5103, 1:500; Affinity, USA), anti-IFN-γ (ab9657, 1:1,000, Abcam, USA), and anti-α-tubulin (2144, 1:1,000, CST, USA). Then, the membranes were washed with 1 × TBST (10 mM Tris-HCl+10 mM NaCl+0.05%Tween-20), incubated with appropriate secondary antibodies: HRP-conjugated anti-rabbit antibody (5571, 1:3,000, CST, USA), at room temperature for 1 h, and then treated with ECL substrate (Millipore, USA).
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6

Protein Expression Analysis in Cellular Aging

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After removing the culture medium, 500 μl protein lysate is added to each well for lysis for 30 minutes, centrifuged at 4° C, 1500 r/min for 5 minutes. And the supernatant is taken to detect the protein concentration AGING of the sample. Transfer the protein to PVDF membrane through Gels preparation, samples loading, electrophoresis and wet transfer and close the blocking solution for 1 hour. Sequentially, primary antibody SHP2 (Abcam, ab187040, 1:5000), Ki-67 (Abcam, ab231172, 1:5000), p-STAT1 (Abcam, ab109461, 1:1000), p-STAT3 (Abcam, ab76315, 1:1000), p-STAT5 (Abcam, ab278764, 1:1000), p-STAT6 (Abcam, ab263947, 1:1000), IL-4 (Abcam, ab34277, 1:1000), IL-10 (Abcam, ab52909, 1:1000), Cathepsin-L (Abcam, ab200738, 1:1000), Cathepsin-S (Abcam, ab134157, 1:1000), Cathepsin-K (Abcam, ab207086, 1:1000), Arginase-1 (Abcam, ab133543, 1:1000) and GAPDH (Abcam, ab181603, 1:10000) are added and the secondary antibody is incubated for 2 hours at room temperature. Exposure imaging is performed and Quantity One V4 software is used for analysis.
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7

Western Blot Analysis of Signaling Proteins

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Proteins were collected, quantified with a BCA kit, and boiled samples (20 μg) were separated via SDS-PAGE, then transferred to a PVDF membrane. The membrane was blocked with 5% skim milk for 2 h and then incubated with primary antibodies, including anti-p-STAT6 (ab263947, Abcam, Cambridge, UK, 1:1000), anti-STAT6 (ab32520, Abcam, 1:1000), anti-p-JAK2 (ab32101, Abcam, 1:1000), anti-JAK2 (ab108596, Abcam, 1:1000), anti-p-STAT3 (ab76315, Abcam, 1:1000), anti-STAT3 (ab68153, Abcam, 1:1000), anti-Bcl-2 (ab32124, Abcam, 1:1000) and anti-β-tubulin (TA503129, OriGene, Rockville, MD, USA, 1:1000) at 4 ℃ overnight. Next, the membrane was incubated with an HRP-conjugated secondary antibodies for 1 h and proteins were visualized using the ECL Western Blotting Detection System (ChemiDoc XRS, Bio-Rad, Hercules, CA, USA).
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8

Western Blot Analysis of Macrophage Markers

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Cells were washed twice with cold PBS, collected using cell scrapers and transferred to pre-chilled tubes. Collected cells were centrifuged at 500g for 5 min, and cell pellets were stored at −80 °C. Proteins were extracted from cell pellets using a lysis buffer for western blotting and their concentrations were measured by bicinchoninic acid assay (Applygen Technologies, P1511). Western blotting was performed according to standard procedures [25 (link)]. The primary antibodies were anti-PLXND1 (NBP1-33634, Novus), anti-SEMA3E (AF3239, R&D Systems), anti-iNOS (ab283655, Abcam), anti-CD206 (ab125028, Abcam), anti-CD163 (ab156769, Abcam), anti-Liver Arginase (ab133543, Abcam), anti-STAT1 (phospho Y701) (ab109457, Abcam), anti-STAT1 (ab109320, Abcam), anti-STAT6 (phospho Y641) (ab263947, Abcam), anti-STAT6 (ab32520, Abcam) and anti-GAPDH (ab9485, Abcam) acted as an internal control. Western blots were quantified using the FIJI software. Uncropped Western blot gels are available in the Supplementary Information section.
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9

Quantitative Protein Analysis of Mouse Retinas

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After lysis of mouse retinas in the RIPA buffer (Beyotime, Shanghai, China), the BCA approach (Beyotime) was utilised to determine protein content. Proteins (around 20 μg) were separated through 10% or 12% SDS-PAGE, followed by transfer on PVDF membranes (0.45 μm; Millipore, Shanghai, China). Later, 5% Bovine Serum Albumin was utilised to block membranes under ambient air for a 1-h period, followed by overnight incubation under 4°C using anti-Iba1 (1:1000, #ab178846, Abcam, Cambridge, MA, USA), anti-iNOS (1:1000, #ab178945, Abcam, Cambridge, MA, USA), anti-CD206 (1:200, AF2535, R&D Systems), anti-STAT1 (1:1000, #ab239360, Abcam, Cambridge, MA, USA), anti-STAT1 (phospho S727, 1:1000, #ab109461, Abcam, Cambridge, MA, USA), anti-STAT6 (1:1000, #ab32520, Abcam, Cambridge, MA, USA), and anti-STAT6 (phospho Y641, 1:1000, #ab263947, Abcam, Cambridge, MA, USA), with β-Tubulin being the endogenous reference. Membranes were rinsed sufficiently through PBST three times. Subsequently, the membrane was exposed to 1-h HRP-labelled secondary antibody incubation. At last, chemiluminescence was used to analyse the expression of each protein.
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