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11 protocols using anti cd63

1

Antibody Selection for Western Blotting

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The antibodies used for Western blotting were anti-CD63 (cat #A19023, Abclonal, Wuhan, China), anti-TSG101 (cat #ab125011, Abcam, Cambridge, UK), anti-CD81 (cat #ab109201, Abcam, Cambridge, UK), and anti-GAPDH (cat #D16H11, CST, Boston, USA).
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2

Proteomic Analysis of Colon Tissue Fractions

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Colon tissues, cells, and EVs fractions were homogenized using the RIPA buffer (Jiangsu KeyGEN BioTECH, Nanjing, China), phosphatase inhibitor cocktail, and protease inhibitor cocktail (Jiangsu KeyGEN BioTECH, Nanjing, China). Pierce BCA Protein Assay Kit (Jiangsu KeyGEN BioTECH, Nanjing, China) was used to determine the protein concentration. Anti-CD63 (A5271, ABclonal), anti-Alix (12422-1-AP, Proteintech), anti-CD81 (66866-1-Ig, Proteintech), anti-Calnexin (ab22595, Abcam), anti-STING (19851-1-AP, Proteintech), anti-Phospho-STING (Ser366) (85735, Cell Signaling Technology), anti-Phospho-STING (Ser365) (72971, Cell Signaling Technology), anti-IRF3 (4302, Cell Signaling Technology), anti-Phospho-IRF3 (Ser396) (29047, Cell Signaling Technology), anti-NF-kB p65 (A19653, ABclonal), anti-Phospho-NF-kB p65 (Ser536) (3303, Cell Signaling Technology), anti-Beta-Actin (4970, Cell Signaling Technology), anti-GAPDH (AF1186, Beyotime Biotechnology) and secondary antibodies (KGP1201, Jiangsu KeyGEN BioTECH, Nanjing, China) were used for western blot.
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3

Isolation and Characterization of Extracellular Vesicles from HepG2 Cells

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The HepG2 cell line was purchased from the ATCC. Dulbecco’s modified Eagle’s medium (DMEM; Gibco, Grand Island, NY, United States) containing 10% fetal bovine serum (Gibco) was used to culture HepG2 cells. The following EVs isolation kits were used: ExoQuick-TC exosome precipitation solution (EXOTC50A-1, System Biosciences, Palo Alto, CA, United States), Total Exosome Isolation (from cell culture medium; 4478359, Invitrogen, Carlsbad, CA, United States), and exoEasy Maxi Kit (76064, EM, Qiagen, Hilden, Germany). After EVs isolation, EVs proteins were extracted with RIPA lysis buffer (Sangon Biotech, Shanghai, China) supplemented with protease inhibitor cocktail (Selleck Chemicals, Houston, TX, United States) for western blot analysis using rabbit polyclonal anti-CD63 (A5271, ABclonal Technology, Woburn, MA, United States) and rabbit anti-tumor susceptibility 101 (TSG101) (HPA006161, Sigma-Aldrich, St. Louis, MO, United States) antibodies.
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4

Exosomal Protein Quantification and Analysis

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Protein quantification was performed using the BCA Protein Assay Kit (P0011, Beyotime, Shanghai, China). Sample proteins were loaded onto a 10% SDS-PAGE gel, electrophoresed, and transferred to a PVDF membrane (0.45 µm; Millipore, Billerica, MA, USA). After blocking with 5% non-fat milk, the membrane was probed with specific antibodies overnight at 4 ℃, including anti-CD63 (A5271, ABclonal, Wuhan, China) and anti-TSG101 (A1692, ABclonal, Wuhan, China). On the following day, the membranes were incubated with the appropriate secondary antibody (ZB-5301, ZSGB-BIO, Beijing, China) at room temperature for 1 h. Immunoblots were then visualized using the BeyoECL Plus Kit (P0018, Beyotime, Shanghai, China).
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5

Exosomal Protein Analysis by Western Blot

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Proteins from exosomes and endothelial cells were collected and extracted using RIPA lysis buffer (Beyotime Institute of Biotechnology, Shanghai, China). The lysate was centrifuged at 12 000 rpm to obtain protein extracts. The protein concentration was measured using a bicinchoninic acid protein assay kit (Beyotime). Next, 15 μg of protein was loaded, separated using sodium dodecyl sulfate–polyacrylamide gel electrophoresis, and transferred to polyvinylidene difluoride membranes (Millipore, Mississauga, Canada). The membranes were incubated with the primary antibodies overnight at 4°C after being blocked with 5% nonfat milk for 1 h. Then, they were incubated with the appropriate secondary antibodies at room temperature for 1 h. The following primary antibodies were used: anti‐CD9, anti‐CD63, and anti‐TSG101 (1:1000; Abclonal, Woburn, MA, USA); anti‐SPRED1, anti‐Ras, and anti‐p/t‐Raf (1:1000; Abcam, Cambridge, UK); anti‐p/t‐MEK1/2 and anti‐p/t‐ERK1/2 (1:1000; Bioworld, Nanjing, China); and anti‐β‐actin (1:10000; Proteintech, Rosemont, IL, USA). The Tanon‐5200 Chemiluminescent Imaging System (Tanon Science & Technology, China) was used to detect the protein bands, after which the grayscale value was calculated using Image J software.
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6

Exosomal Protein Characterization by Western Blot

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Exosomes were lysed with RIPA Lysis Buffer I (Sangon Biotech, Cat: C500005) to obtain the total protein. Then, the extracted proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto a nitrocellulose membrane. The primary antibodies used here included: anti-CD9 (Abclonal, Cat: A1703), anti-CD63 (Abclonal, Cat: A5271), anti-TSG101 (Abclonal, Cat: A1692), and anti-HSPA5 (Abclonal, Cat:A11366).
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7

Protein Quantification and Western Blot Analysis

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The concentrations of all the protein we extracted from cells , exosomes and tissues were determined using a BCA protein assay kit ( Beyotime Biotech, Jiangsu, China) according to manufacturer instructions. Subsequently, a certain amount of total protein[20ug-80ug] was heated to 95 °C for 10 min in 1 × DTT-containing sodium dodecyl sulfate (SDS) sample buffer and separated by 10% SDSpolyacrylamide gel electrophoresis, followed by transfer onto polyvinylidene uoride membranes (BioTrace; Bio-Rad, Hercules, CA, USA). Membranes were blocked with 5% bovine serum albumin for 1 h, and polyclonal antibodies, including anti-CD63,anti-CD81, anti-TSG101,anti-AKT,anti-p-AKT anti-ALIX, anti-HMGB1, anti-Caspase-3,anti-Bcl2 (Abclonal, Woburn, MA, USA), anti-ACTB, anti-GAPDH (Ray Antibody, Beijing, China), and anti-Calnexin (Bioworld, Dublin, OH, USA), were used for immunoblotting at 4 °C overnight. Each speci c horseradish peroxidase-conjugated secondary antibody (Ray Antibody) was added accordingly after the membranes were washed in TBS-Tween solution (TBS-T) three times for 30 min, and signals were detected by enhanced chemiluminescence (Pierce, Rockford, IL, USA).
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8

Protein Quantification and Western Blot Analysis

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The concentrations of all the protein we extracted from cells , exosomes and tissues were determined using a BCA protein assay kit ( Beyotime Biotech, Jiangsu, China) according to manufacturer instructions. Subsequently, a certain amount of total protein[20ug-80ug] was heated to 95 °C for 10 min in 1 × DTT-containing sodium dodecyl sulfate (SDS) sample buffer and separated by 10% SDSpolyacrylamide gel electrophoresis, followed by transfer onto polyvinylidene uoride membranes (BioTrace; Bio-Rad, Hercules, CA, USA). Membranes were blocked with 5% bovine serum albumin for 1 h, and polyclonal antibodies, including anti-CD63,anti-CD81, anti-TSG101,anti-AKT,anti-p-AKT anti-ALIX, anti-HMGB1, anti-Caspase-3,anti-Bcl2 (Abclonal, Woburn, MA, USA), anti-ACTB, anti-GAPDH (Ray Antibody, Beijing, China), and anti-Calnexin (Bioworld, Dublin, OH, USA), were used for immunoblotting at 4 °C overnight. Each speci c horseradish peroxidase-conjugated secondary antibody (Ray Antibody) was added accordingly after the membranes were washed in TBS-Tween solution (TBS-T) three times for 30 min, and signals were detected by enhanced chemiluminescence (Pierce, Rockford, IL, USA).
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9

Protein Quantification and Western Blot Analysis

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The concentrations of all the protein we extracted from cells , exosomes and tissues were determined using a BCA protein assay kit ( Beyotime Biotech, Jiangsu, China) according to manufacturer instructions. Subsequently, a certain amount of total protein[20ug-80ug] was heated to 95 °C for 10 min in 1 × DTT-containing sodium dodecyl sulfate (SDS) sample buffer and separated by 10% SDSpolyacrylamide gel electrophoresis, followed by transfer onto polyvinylidene uoride membranes (BioTrace; Bio-Rad, Hercules, CA, USA). Membranes were blocked with 5% bovine serum albumin for 1 h, and polyclonal antibodies, including anti-CD63,anti-CD81, anti-TSG101,anti-AKT,anti-p-AKT anti-ALIX, anti-HMGB1, anti-Caspase-3,anti-Bcl2 (Abclonal, Woburn, MA, USA), anti-ACTB, anti-GAPDH (Ray Antibody, Beijing, China), and anti-Calnexin (Bioworld, Dublin, OH, USA), were used for immunoblotting at 4 °C overnight. Each speci c horseradish peroxidase-conjugated secondary antibody (Ray Antibody) was added accordingly after the membranes were washed in TBS-Tween solution (TBS-T) three times for 30 min, and signals were detected by enhanced chemiluminescence (Pierce, Rockford, IL, USA).
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10

Protein Quantification and Western Blot Analysis

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The concentrations of all the protein we extracted from cells , exosomes and tissues were determined using a BCA protein assay kit ( Beyotime Biotech, Jiangsu, China) according to manufacturer instructions. Subsequently, a certain amount of total protein[20ug-80ug] was heated to 95 °C for 10 min in 1 × DTT-containing sodium dodecyl sulfate (SDS) sample buffer and separated by 10% SDSpolyacrylamide gel electrophoresis, followed by transfer onto polyvinylidene uoride membranes (BioTrace; Bio-Rad, Hercules, CA, USA). Membranes were blocked with 5% bovine serum albumin for 1 h, and polyclonal antibodies, including anti-CD63,anti-CD81, anti-TSG101,anti-AKT,anti-p-AKT anti-ALIX, anti-HMGB1, anti-Caspase-3,anti-Bcl2 (Abclonal, Woburn, MA, USA), anti-ACTB, anti-GAPDH (Ray Antibody, Beijing, China), and anti-Calnexin (Bioworld, Dublin, OH, USA), were used for immunoblotting at 4 °C overnight. Each speci c horseradish peroxidase-conjugated secondary antibody (Ray Antibody) was added accordingly after the membranes were washed in TBS-Tween solution (TBS-T) three times for 30 min, and signals were detected by enhanced chemiluminescence (Pierce, Rockford, IL, USA).
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