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11 protocols using easysep mouse epithelial cell enrichment kit

1

Mouse Cell Line Isolation and Culture

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The following mouse C57BL/6 (B6) cell lines were purchased and cultured for RNA isolation according to the manufacturer’s instructions: BMMCs, (c57–6271F, Caltag Medsystems, Buckingham, UK); ESCs (SCRC-1002, LGC Standards, Middlesex, UK); MEFs, untreated, (GSC-6002, AMS Biotechnology Ltd); mesenchymal stem cells, (MUBMX-01001 Cambridge Bioscience, Cambridge, UK). B6 postnatal mammary epithelial cells were isolated as described45 (link). The mammary epithelial fraction was further purified using EasySep Mouse Epithelial Cell Enrichment Kit according to the manufacturer’s instructions (19758, STEMCELL Technologies UK). HUVECs were cultured according to the manufacturer’s instruction (191027, Lonza, Basel, Switzerland).
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2

Mammary Epithelial Cell Isolation and Analysis

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One week after completion of Tmx treatment (K8mTmG mice), or 12 weeks after Tmx or vehicle treatment (K8-CTR or K8PTEN-KO mice), the third, fourth, and fifth pairs of mammary glands were harvested from virgin female mice. MECs were isolated as previously described (Shore et al, 2012 (link)). MECs were resuspended at a concentration of 1 × 108 cells/ml in HBSS supplemented with 10 mM HEPES and 2% FBS (HBSS+). This cell suspension was depleted of lineage-positive cells (CD45, Ter119, CD31, and BP-1) using the EasySep™ Mouse Epithelial Cell Enrichment Kit (Stem Cell Technologies). MECs were subsequently resuspended in HBSS+ at a density of 1 × 107 cells/ml and stained with anti-mouse CD24 conjugated to Allophycocyanin (APC) (Biolegend, 1:100), anti-mouse CD29 conjugated to Pacific Blue (BioLegend, 1:100), and anti-mouse CD49f conjugated to Pacific Blue (Biolegend, 1:100). Cells were analyzed using a BD LSR Fortessa Cell Analyzer. Flow Cytometry data was analyzed using FloJo software.
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3

Isolation and Identification of ALDH-Expressing Cells

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ALDEFLUOR kit (STEMCELL technologies, Cat. #: 01700) is used for the identification, evaluation and isolation of stem and progenitor cells expressing high levels of ALDH. SUM159 and 4T1 tumor tissues were collected the last day of FMD cycle, before refeeding period, and were dissociated enzymatically to obtain a single-cell suspension as previously described. Mouse stromal cells were removed with EasySep Mouse Epithelial Cell Enrichment Kit (STEMCELL technologies, Cat. #19868). A specific inhibitor of ALDH, diethylaminobenzaldehyde (DEAB), was used to control for background fluorescence for each sample. Cells expressing high levels of ALDH become brightly fluorescent (ALDHbr) and were identified by flow cytometry with FACSCalibur (BD). Data were processed by FlowJo software.
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4

Isolation and Analysis of Single Cells from Gas6-/- Mice

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Single cells were isolated from Gas6-/- or wildtype mice (3 mice per group) and resuspended in HBSS containing 2% FBS and 100 mM Hepes (HBSS+) at a concentration of 1 × 107 cells/ml. Antibody staining was performed as previously described [35 (link)], and antibodies are listed in S1 Table. Lineage exclusion was achieved with the EasySep Mouse Epithelial Cell Enrichment Kit (Stem Cell Technologies) prior to antibody staining. Cells were filtered with a 35 μm cell strainer, stained with 5 nM SYTOX (Life Technologies), and analyzed by flow cytometry using BD LSRII flow cytometer. Data were analyzed using FlowJo version 10.
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5

Isolation of Murine Mammary Epithelial Cells

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Mammary tissue was obtained at p13 and L1 from wild type mice. Tissue was digested for 2 hours at 37°C in complete EpiCult-B medium (EpiCult-B medium with 5% fetal bovine serum) supplemented with 300 U/mL collagenase and 100 U/mL hyaluronidase. After lysis of red blood cells in NH4Cl, single cell suspensions were obtained by sequential dissociation with pre-warmed 0.25% Trypsin-EDTA, followed by pre-warmed 5 mg/mL Dispase and 0.1 mg/mL DNase I, and filtration through a 70 μm cell strainer. All reagents were from Stemcell Technologies unless otherwise specified. Obtained single cell suspensions were isolated to mammary epithelial cells by the removal of non-epithelial cell compartments with the biotinylated antibodies against the cell surface antigens of murine hematopoietic, endothelial, and fibroblast cells (CD45, CD31, TER119, and BP-1) using EasySep Mouse Epithelial Cell Enrichment Kit (Stemcell Technologies).
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6

Isolation of Murine Mammary Epithelial Cells

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Mammary tissue was obtained at p13 and L1 from wild type mice. Tissue was digested for 2 hours at 37°C in complete EpiCult-B medium (EpiCult-B medium with 5% fetal bovine serum) supplemented with 300 U/mL collagenase and 100 U/mL hyaluronidase. After lysis of red blood cells in NH4Cl, single cell suspensions were obtained by sequential dissociation with pre-warmed 0.25% Trypsin-EDTA, followed by pre-warmed 5 mg/mL Dispase and 0.1 mg/mL DNase I, and filtration through a 70 μm cell strainer. All reagents were from Stemcell Technologies unless otherwise specified. Obtained single cell suspensions were isolated to mammary epithelial cells by the removal of non-epithelial cell compartments with the biotinylated antibodies against the cell surface antigens of murine hematopoietic, endothelial, and fibroblast cells (CD45, CD31, TER119, and BP-1) using EasySep Mouse Epithelial Cell Enrichment Kit (Stemcell Technologies).
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7

Isolation of Mouse Lung Epithelial Cells

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Isolation of lung epithelial cells from C57BL/6 mouse was performed as described previously by using the EasySep™ mouse epithelial cell enrichment kit (Cat. no. 19758; STEMCELL Technologies, Canada) [4 (link),28 (link)–30 (link)]. Briefly, mouse lungs teased out of bronchiole, chopped into tiny pieces, were enzymatically homogenized, passed through a 40 μm cell strainer and then subjected to mouse epithelial cell isolation kit containing a cocktail of anti-CD31, anti-CD45, anti-TER119 antibodies following manufacturer’s protocol. Purity of the enriched lung cells were validated by staining with anti-B220, anti-CD3, anti-CD11b, anti-CD11c, anti-NK1.1 and F4/80 antibodies before (8.99%, 14.47%, 9.03%, 4.30%, 5.82% and 23.71% respectively) and after (0.28%, 0.53%, 1.09%, 1.15%, 0.15% and 1.48% respectively) enrichment. Recovery of PLE cells ranged from 4 X 106 to 5 X 106 with above 99% purity.
BAL cells were isolated by using a catheter-attached 1 ml syringe through a small transverse incision of the exposed trachea, as described before [4 (link)]. BAL cells were cultured overnight to enrich the adhering macrophage population, which was found to be 92.33% pure by F4/80 staining.
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8

Mammary Gland and Tumor Tissue Dissociation

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Fresh mammary glands and tumor tissues were cut into small pieces. Tissues were digested using a “Digestion I” solution (DMEM/F12 (Gibco, Life Technologies, #11330-032) supplemented with 5% fetal bovine serum (FBS) (Prime) (ExCell Bio, #FSP500), 5 µg/ml insulin (Sigma-Aldrich, #I1882), 500 ng/ml hydrocortisone (Sigma-Aldrich, #H0888), 10 ng/ml EGF(Invitrogen, Thermo Fisher Scientific, #13247-051), 300 U/ml collagenase III (Worthington, #S4M7602S), and 100 U/ml hyaluronidase (Sigma-Aldrich, #H3506) for 2 h at 37 °C and a “Digestion II” solution (HBSS (Gibco, Life Technologies, #14170), 5 mg/ml Dispase II (Roche Diagnostics, # 04942078001), and 0.1 mg/ml deoxyribonuclease (Worthington Biochemical, #LS002145)) for 5 min at 37 °C, followed by 0.25% trypsin-EDTA (Gibco, Life Technologies, #25200) treatment for 1 min and red blood cell lysis buffer (Invitrogen, Thermo Fisher Scientific, #00-4333-57) treatment for 5 min at room temperature. Samples were filtered through a 40 µm cell strainer to a 5 ml polystyrene tube. Epithelial cells were enriched using the EasySep Mouse Epithelial Cell Enrichment Kit (STEMCELL TECHNOLOGIES, #19868).
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9

Isolation of Prostate Epithelial Cells from Genetically-Modified Mice

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Whole prostate gland including anterior, dorsolateral and ventral lobes were harvested from 8 -12 weeks old Trp53 -/-; Rb f/f , Trp53 -/-; Pten f/f or Trp53 -/-; Rb f/f ; Pten f/f male mice, and digested with one part 10x Collagenase/Hyaluronidase (#07912, STEMCELL Technologies) and nine parts DMEM/F-12 (#36254, STEMCELL Technologies) supplemented with 5% FBS (#SH30079, HyClone) for 3 hrs at 37 °C. The resultant organoids were further digested in 0.25% trypsin-EDTA (1 hr), 5 mg/ml Dispase and 100 μg/ml DNase I (1 min), and then filtered through a 40 μm cell strainer. Lineage positive hematopoietic, endothelial and fibroblast cells (CD45 + ; CD31 + ; Ter119 + ; BP-1 + ) were removed using EasySep Mouse Epithelial Cell Enrichment Kit (#19758, STEMCELL Technologies). The resulting epithelial cells were maintained in FBS-free ProstaCult TM Medium (#05640, STEMCELL Technologies) supplemented with 10 ng/mL recombinant human bFGF (rh bFGF) (PeproTech), 10 ng/mL recombinant human EGF (rh EGF) (PeproTech) and 4 μg/mL Heparin (#07980, STEMCELL Technologies), and plated onto collagen coated dishes (Iwaki).
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10

Enrichment and Sorting of Mammary Tumor Cells

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Mammary tumors were dissociated into single cell suspensions through mechanical separation and enzymatic digestion as described22 (link). Dissociated tumor cells were enriched for Lin (CD45/ CD31/ TER119/ BP-1) mammary epithelial cells with StemCell Technologies EasySep Mouse Epithelial Cell Enrichment Kits per the manufacturer’s instructions. Lin cells were then incubated on ice for 20 min with anti-CD49f (α6 integrin) (BD Biosciences 555734) together with Alexafluor 647 (Invitrogen A21247) in PBS. Cells were spun down for 5 min at 550x g, then incubated with EpCAM-FITC conjugated antibody (Biolegend 118208) in PBS. Tumor cells were sorted on a BD FACS Aria cell sorter machine equipped with Diva software into their luminal (Lin/ CD49flow/EpCAMhigh) and basal (Lin/CD49fhigh/EpCAMlow) subpopulations. Sorted cells were collected into 15ml conical tubes containing PBS. Genomic DNA was collected from sorted cell populations using Qiagen Blood and Tissue DNeasy spin column kit. Total RNA was collected from sorted cell populations using Qiagen RNeasy spin column kit. RNA was reversed transcribed using Invitrogen Superscript II First Strand Synthesis kit.
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