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7 protocols using a2445

1

Immunofluorescence Analysis of Nutrient Sensors

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Coverslips were placed in 6-well plates, and C2C12 myoblasts were seeded into the plates and fixed in 4% paraformaldehyde. Cells were permeabilized with 0.5% Triton X-100 in phosphate-buffered saline (PBS), followed by blocking in PBS containing bovine serum albumin (BSA) and staining with antibodies. The primary antibodies were against SLC38A9 (1:200, ab130398, Abcam, Cambridge, MA, USA), SLC36A1 (1:100, sc-368553, Santa Cruz Biotechnology, Dallas, TX, USA), mTOR (1:100, A2445, Abclonal Technology, Wuhan, China; 1:200, 2983, Cell Signaling Technology, Danvers, MA, USA), and LAMP2 (1:100, sc-20004, Santa Cruz Biotechnology, Dallas, TX, USA). Secondary fluorochrome-conjugated antibodies (Boster Biological Technology, Wuhan, China) were diluted at 1:100. To assess SLC38A9, SLC36A1, and mTOR translocation, the numbers of SLC38A9, SLC36A1, mTOR, and LAMP2-positive spots per cell were calculated using IPP6.0 and Image J software.
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2

Protein Expression Analysis in Human Follicular Stem Cells

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After transfected HFSCs were incubated for 48 h, the total cell protein was extracted and quantified with a BCA kit. The extracted protein samples were mixed with protein loading buffer (Beyotime, Shanghai, China) then heated in a boiling water bath for 5 min. The samples (10 μL per well) were loaded onto SDS-PAGE gels and subjected to electrophoresis followed by electrophoretic transfer to nitrocellulose membranes. For this transfer, the current was set to 250 mA, and the run time was typically 90 min, but the run time was 120 min for experiments involving detection of MTOR or p-MTOR. The membranes were blocked with 5% BSA for 1 h and incubated for 12 h with primary antibodies. The membranes were washed 3 times for 5 min with TBST buffer then were incubated with secondary antibody for 1 h and washed with TBST. Band densities were analyzed with Image J software. The rabbit primary antibodies used in this study were: GAPDH (1:1000, AC027, ABclonal), PIK3R3 (1:500, A17112, ABclonal), AKT (1:500, bs-0115R, Bioss), p-AKT (1:500, bs-2720R, Bioss), MTOR (1:500, A2445, ABclonal), and p-MTOR (1:500, P0094, ABclonal). The secondary antibody was horseradish peroxidase-conjugated goat anti-rabbit IgG (1:2000, ab97051, ABcam).
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3

Western Blot Analysis of Key Signaling Proteins

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Western blot was performed as described previously (21 (link)). LV tissue was homogenized in radioimmunoprecipitation buffer containing 1% protease inhibitor cocktail, and the concentration of the supernatant was measured by means of BCA. After the target proteins were loaded onto an SDS polyacrylamide gel, proteins were transferred from the gel to a PVDF membrane. Subsequently, the membranes were incubated overnight with Areg, mTOR (A2445, ABclonal), AKT (A18120, ABclonal), P-AKT (AP0655, ABclonal), or P-mTOR (AP0094, ABclonal) antibody after being blocked for 1 h. After washed in TBST, the membranes were incubated with HRP-linked secondary antibody for 60 min at room temperature. The protein bands were detected using an enhanced chemiluminescence agent (ECL reagents) and analyzed.
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4

Western Blot Analysis of Liver Proteins

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Based on the method described in our laboratory [31 (link)], we used the western blot to detect mTOR, p-mTOR, S6, p-S6, Nrf2, and Keap1 protein expression levels. Briefly, the liver was prepared with the RIPA buffer (Thermo Fisher Scientific). Then, the proteins (40 μg from each sample) were separated on 8% or 12% SDS–polyacrylamide gel, depending on the molecular weight of proteins. They were transferred to the PVDF membranes (Thermo Fisher Scientific), blocked with 8% (w/v) skimmed milk in the TBST buffer (20 mM Tris–HCl, 0.1% Tween 20, 150 mM sodium chloride, pH 7.5) for 1 h, washed thrice with the TBST buffer for 10 min each, and followed by the incubation with specific primary antibodies, such as rabbit anti-p-mTOR-S2448 (1 : 2000, AP0094; Abclonal, Wuhan, China), anti-mTOR (1 : 1000, A2445; Abclonal), anti-p-S6- S235/236 (1 : 1000, AP0538; Abclonal), anti-S6 (1 : 1000, A6058; Abclonal), anti-Nrf2 (1 : 1000, A0674; Abclonal), and anti-Keap1 (1 : 5000, A17061; Abclonal) for overnight at 4°C. They were then incubated with goat anti-rabbit secondary antibody (1 : 10000). Immunoreactive bands were visualized via the enhanced chemiluminescence (Cell Signaling Technology) and quantified via the densitometry using ImageJ software (version 1.42, NIH).
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5

Western Blot Analysis of Autophagy and EMT Markers

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Proteins of lung tissues and RLE‐6TN cells were extracted with RIPA Lysis Buffer (Beyotime, Shanghai, China). After quantification, the protein samples were subjected to SDS-PAGE, then blotted onto polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). The membranes were probed with the following primary antibodies LC3B (ab48394, 1 µg/ml, Abcam), Beclin-1 (ab207612, 1:2000, Abcam), p62 (ab109012, 1:10000, Abcam), E-cadherin (ab231303, 1 µg/ml, Abcam), N-cadherin (ab76011, 1:5000, Abcam), Vimentin (ab92547, 1:1000, Abcam), α-SMA (ab124964, 1:10000, Abcam), collagen I (ab270993, 1:1000, Abcam), Fibronectin 1 (ab45688, 1:1000, Abcam), p-PI3K (ab182651, 1:1000, Abcam), PI3K (ab191606, 1:1000, Abcam), p-Akt (ab38449, 1:500, Abcam), Akt (ab38449, 1:500, Abcam), p-mTOR (AP0094, 1:500, ABclonal), mTOR (A2445, 1:500, ABclonal), CDC27 (A3333, 1:1000, ABclonal), and GAPDH (ab8245, 1:2000, Abcam) at 4°C overnight, followed by incubation with secondary antibody (bs-0295 G-HRP, 1:1000, Bioss). ECL chemiluminescence (Beyotime) was applied for analysis.
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6

Western Blot Analysis of Cellular Pathways

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Cell lysates were prepared in RIPA lysis buffer, including protease inhibitors (CoWin Biosciences, Beijing, China) and phosphatase inhibitors (CoWin Biosciences, Beijing, China). Equal amounts of proteins were subjected to SDS-polyacrylamide gels. After that, the proteins were transferred to nitrocellulose membranes, and the membranes were blocked with 5% non-fat dried milk for 1 h at room temperature. Each membrane was then incubated with the primary antibody, anti-tubulin (1:1000, AbClonal, AC021), anti-cyclin D1 (1:1000, CST, CST2978), anti-PCNA (1:1000, CST, CST13110), anti-p-eIF2a (1:1000, Abclonal, AP0692), anti-Chop (1:1000, Abclonal, A0221), anti-ATF6 (1:1000, Abclonal, A0202), anti-AKT (1:1000, CST, CST4060), anti-p-AKT (1:1000, CST, CST4691), anti-mTOR (1:1000, Abclonal, A2445), anti-p-mTOR (1:1000, Abclonal, AP0115), anti-P70S6K (1:1000, Abclonal, A2190) or anti-p-P70S6K (1:1000, Abclonal, AP0478), overnight at 4 °C. After incubation with IRDye 800cw or 680cw conjugated antibodies (1:5000 dilution) for 1 h, the membranes were imaged with Odyssey® CLx Infrared Imaging System. The WB had at least 3 biological replicates.
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7

Western Blot Analysis of Nutrient Transporters

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Protein samples were separated by 10% or 12% SDS-PAGE (SDS, sodium dodecyl sulfate; PAGE, polyacrylamide gel electrophoresis) gels and transferred to a polyvinylidene fluoride (PVDF) membrane. After blocking with 5% fat-free milk in TBST for 2 h, the membranes were incubated with primary antibodies against SLC38A9 (1:1000, ab81687, Abcam, Cambridge, MA, USA), SLC36A1(1:500, sc-368553, Santa Cruz Biotechnology, Dallas, TX, USA), mTOR (1:500, A2445, Abclonal Technology, Wuhan, China), phospho-mTOR (1:500, 2971, Cell Signaling Technology, Danvers, MA, USA), S6K (1:500, sc-230, Santa Cruz Biotechnology, Dallas, TX, USA), phospho-S6K (1:1000, AF3228, Affinity Biosciences, Cincinnati, OH, USA), HA-Tag (1:500, 3724, Cell Signaling Technology, Danvers, MA, USA), and β-Actin (1:1000, BM0627, Boster Biological Technology, Wuhan, China) overnight at 4 °C. The results were visualized using horseradish peroxidase-conjugated secondary antibodies (Santa Cruz Biotechnology, Dallas, TX, USA) and enhanced chemiluminescence.
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