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6 protocols using tc s 7009

1

Hypoxia and HIF Inhibition in Breast Cancer

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MDA-MB-231, MCF7, and MCF10A cells were obtained from the from the American Type Culture Collection and maintained as suggested. These were tested for mycoplasma contamination and characterized by short tandem repeat and Q-band assays. Normoxic cells were maintained in a humidified chamber (ambient O2, 5% CO2, and 37 °C). Hypoxic cells were incubated in a HypOxystation H35 (HypOxygen) at 1% O2, 5% CO2, and 37 °C. The hypoxia mimetic DMOG (Cayman Chemical) was used at 1 mM for 0.5, 1, and 2 h in normoxia. The HIF-1α inhibitor Echinomycin (Tocris; 20 nM) and the HIF-2α inhibitor TC-S 7009 (Tocris; 100 μM) were given to cells for 24 h before hypoxic incubation. Echinomycin is a DNA-binding agent that specifically blocks HIF-1 DNA binding activity (51 (link)). TC-S 7009 binds the HIF-2α PAS-B domain to disrupt its heterodimerization with HIF-1β and decreasing HIF-2 DNA binding (Tocris). The specific inhibitor of IGF1R autophosphorylation, AG1024 (MedChemexpress; 10 μM), was given to cells 1 h prior to treatment with NPYR agonists (Tocris; 10 nM): NPY (cat#1153), NPY1R specific (Cat#1176), or NPY5R specific (cat#1365).
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2

Hypoxic Response in BeWo Cells

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BeWo cells were cultured for 24 h. Then, the medium was replaced with fresh medium containing 0.1% DMSO as a vehicle control or 30 μM TC-S7009 (Tocris Biosciences, Bristol, UK). After incubation for 24 h under chemically mimicked hypoxic conditions, the cells were subjected to cell viability assays or qRT-PCR analysis.
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3

Antibody-based Protein Detection Protocols

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GAPDH antibody was purchased from Santa Cruz Biotechnology (Dallas, TX, USA), ARv7 antibody was purchased from Precision Antibody (Columbia, MD, USA), MKNK2 antibody from Thermo Fisher Scientific (Waltham, MA, USA), anti-mouse/rabbit secondary antibody for western blot from Thermo Fisher Scientific, and anti-Ago2 antibody was purchased from Cell Signal Technology (Danvers, MA, USA). Immunoglobulin G (IgG) antibody was purchased from Santa Cruz Biotechnology. Enz was purchased from Selleck Chemicals (Houston, TX, USA) and TC-S 7009 from Tocris Bioscience (Avonmouth, Bristol, UK).
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4

Hypoxia-induced Proliferation Modulation

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HPF cells were seeded at a density of 2,000 cells/well in 96-well plates. Then, 24 hrs after seeding, the medium was replaced with fresh medium with and without the following inhibitors at concentrations ranging from 0–100 µM: HIF-1α inhibitor KC7F2 (TOCRIS, Pittsburg, PA), HIF-2α inhibitor TC-S 7009 (TOCRIS, Pittsburg, PA), calcium chelator BAPTA-AM (Life Technologies, Carlsbad, CA), calcium channel blocker verapamil chloride (Sigma, St. Louis, MO), and calcineurin inhibitor cyclosporine A (CsA, R&D Systems, Minneapolis, MN). Cells were treated with these compounds and exposed to normoxic (21% O2) or hypoxic conditions (1% O2) for 3 days in the presence of the inhibitors for the entire 3 days. Separate sets of wells were maintained for media and solvent controls. Cell proliferation and cell viability were determined by BrdU assay (EMD Millipore, St Charles, MO) and LDH assay (Thermo Scientific, Waltham, MA), respectively. Cell proliferation and viability graphs were plotted using Origin (OriginLab, Northampton, MA) software with DoseResp function.
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5

Inhibition of PFKFB3 for Cancer Therapy

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The PFKFB3 inhibitor AZ67, CAY10535 and TC‐S 7009 were supplied by Tocris Bioscience (Bristol, UK). PT‐2385 was supplied by MedChemExpress (Monmouth Junction, NJ, USA) and YC‐1 was supplied by Sigma (St. Louis, MO, USA). More detailed information is provided in Tables S1, S2 and S4.
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6

Investigating Choriocarcinoma Cell Response

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Trophoblast-derived choriocarcinoma cell lines were seeded at a density of 4.35 × 104 cells/cm2 in cell culture plates or dishes (Sumitomo Bakelite Co.) and then cultured for 24 h. The medium was replaced with fresh medium containing 0.1% dimethyl sulfoxide (DMSO) (Sigma-Aldrich, St. Louis, MO, USA) as control vehicle or 30 μM TC-S7009 (Tocris Biosciences, Bristol, UK). After incubation for 24 h under normoxic or hypoxic conditions, the cells were subjected to cell viability assay, quantitative real-time PCR analysis, or Western blot analysis.
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