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Macs depletion column

Manufactured by Miltenyi Biotec

MACS depletion columns are single-use separation devices designed for the isolation of target cells from heterogeneous cell populations. The columns contain a matrix that retains the magnetically labeled cells, allowing the unlabeled cells to pass through. This enables the efficient depletion of unwanted cells from the sample.

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8 protocols using macs depletion column

1

Isolation of CD11b- and Sca-1-Positive Cells

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Ubiquitous red fluorescent mice (Ds-Red.T3, CD1-background) were sacrificed by cervical dislocation, spleens were explanted and mechanically minced. MNCs were isolated using a Ficoll gradient (Lympholite-M, Cedarlane). For preparation of CD11b- and Sca-1-positive cells, the same amount of spleen-derived MNCs was subjected to magnetic bead separation. In brief, spleen-derived MNCs were washed, re-suspended and mixed with colloidal superparamagnetic microbeads conjugated to CD11b or Sca-1 antibodies (MACS MicroBeads, Miltenyi Biotec). After incubation and additional washing, magnetic cell separation was performed by filling the cell suspension into a depletion column placed in the magnetic field of a magnetic bead separator (MACS Depletion Columns; MidiMACS Separator, Miltenyi). The collected effluent contained the negative MNC fraction depleted of CD11b- or Sca-1-positive cells, respectively. After taking the column out of the magnetic field, the attached CD11b-/Sca-1-positive MNCs were collected in buffer.
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2

Isolation and Characterization of Hematopoietic and Niche Cells

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To isolate HSPC we used MACS depletion columns (Miltenyi) after incubation with a cocktail of biotin–labeled antibodies (as described in the flow cytometry section) followed by an incubation with streptavidin–coated microbeads (Miltenyi). Then cells were stained with c–kit and sca–1 and LSK were FACS–sorted using a FACSAria II cell sorter (BD Biosystems). To purify niche cells from hematopoietic cells we used MACS depletion columns after incubation with a cocktail of biotin–labeled antibodies as above followed by an incubation with streptavidin–coated microbeads. Then cells were stained with CD45.2, sca–1, CD31 and CD51 (Biolegend, clone RMV–7, 1:100). Endothelial cells were identified as linlow CD45low sca–1high CD31high. Bone marrow MSC were identified as linlow CD45low CD31low sca–1high/intermediate and GFP+. Osteoblasts were linlow CD45low sca–1low CD31low CD51high. For adoptive transfer of GFP+ neutrophils and Ly6Chigh monocytes, bone marrow cells were collected from Ubc–GFP mice for purification of neutrophils and monocytes using MACS depletion columns after incubation with a cocktail of PE–labeled antibodies including B220, CD90, CD49b, NK1.1 and Ter–119 followed by an incubation with PE–coated microbeads. Aortic endothelial cells were identified as CD45.2low CD31high CD107aint/high and FACS–sorted using a FACSAria II cell sorter.
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3

Purification and Transfer of Monocyte Subsets

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Single cell suspensions of splenocytes from between 25–50 Cx3cr1gfp/+ mice were stained with biotin-labeled anti-CD3 and anti-CD19 antibodies (eBioscience) and depleted of positive cells using anti-biotin microbeads and MACS depletion columns (Miltenyi Biotech). Monocytes were sorted from the remaining cells as described [42] (link) by collecting single, live, lineage (CD3, B220, DX5, Ly6G, I-Ab, F4/80, Siglec F, CD11c) negative, CD11b+, GFP+, Ly6Chigh or Ly6Clow cells. Each recipient mouse received either 2×105 Ly6Chigh or Ly6Clow monocytes intravenously. 24 hours after transfer, mice were injected i.v. with Pe-Cy7-conjugated anti-CD45 Ab and liver leukocytes were isolated and stained for CD11b, Ly6C, LIVE/DEAD viability, and PD-L2. A lineage negative gate including CD3, B220, DX5, and Siglec F was used to exclude cells from analysis.
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4

Isolation and Characterization of Hematopoietic and Niche Cells

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To isolate HSPC we used MACS depletion columns (Miltenyi) after incubation with a cocktail of biotin–labeled antibodies (as described in the flow cytometry section) followed by an incubation with streptavidin–coated microbeads (Miltenyi). Then cells were stained with c–kit and sca–1 and LSK were FACS–sorted using a FACSAria II cell sorter (BD Biosystems). To purify niche cells from hematopoietic cells we used MACS depletion columns after incubation with a cocktail of biotin–labeled antibodies as above followed by an incubation with streptavidin–coated microbeads. Then cells were stained with CD45.2, sca–1, CD31 and CD51 (Biolegend, clone RMV–7, 1:100). Endothelial cells were identified as linlow CD45low sca–1high CD31high. Bone marrow MSC were identified as linlow CD45low CD31low sca–1high/intermediate and GFP+. Osteoblasts were linlow CD45low sca–1low CD31low CD51high. For adoptive transfer of GFP+ neutrophils and Ly6Chigh monocytes, bone marrow cells were collected from Ubc–GFP mice for purification of neutrophils and monocytes using MACS depletion columns after incubation with a cocktail of PE–labeled antibodies including B220, CD90, CD49b, NK1.1 and Ter–119 followed by an incubation with PE–coated microbeads. Aortic endothelial cells were identified as CD45.2low CD31high CD107aint/high and FACS–sorted using a FACSAria II cell sorter.
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5

Synchronized Cultivation of Plasmodium falciparum

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The VarO and the 3D7/Pf13 parasite lines were described elsewhere21 (link),25 (link). The P. falciparum isolate NF5441 (link) was used to generate clonal and transgenic lines (see Supplemental Table 1 for description of parasite lines). Parasites were cultivated in vitro as described42 (link) using RPMI 1640 medium (Gibco) supplemented with 10% heat-inactivated human serum, hypoxanthin 10 mM, gentamicin (20 µg/ml) and human erythrocytes at 5% hematocrit. Infected erythrocytes were cultivated at 37 °C, 5% CO2, 2% O2. To obtain synchronous asexual stages, parasites were synchronized by the isolation of trophozoites by magnetic isolation using a MACS depletion column (Miltenyi Biotec) in conjunction with a magnetic separator, and placed back into culture. After the invasion of merozoites, ring-stage parasites were selected by magnetic depletion of trophozoites to obtain a tighter window of synchronization. Synchronous production of gametocytes was achieved as described43 (link). Briefly, the culture medium was supplemented with 50 mM N-acetyl-glucosamine from day 0 onwards, and a medium replacement was continued for 5 to 6 days to eliminate the asexual stages.
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6

Isolation and activation of CD4+ T cells

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T cells and B cells were sorted from splenic cell suspensions from DO11.10 TCR transgenic mice on the BALB/c background with a typical purity of >90%. For CD4+ T cells, splenocytes were incubated with magnetic bead-conjugated antibodies against CD11b, CD11c, Ly6G, CD8, and B220 (Miltenyi Biotec, San Diego, CA), and the cells without magnetic beads were sorted using a MACS depletion-column (Miltenyi Biotec). Antibodies against CD11b, CD11c, Ly6G, CD8, and Thy1.2 were used for B cells. For T cell activation, CD4+ T cells were cultured on a plate pre-coated with antibodies against CD3 and CD28 (1 μg/ml each, from BD Biosciences, Franklin Lakes, NJ). All animal experiments were conducted according to the institutional guidelines for animal welfare as per protocols approved by the Animal Experiment Committee of Osaka University.
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7

Gametocyte Isolation from Malaria Parasites

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The P. falciparum clonal lines B10 and 3D7 (clones of NF54), and the transgenic lines pHL-pfpka-r, and PfPDEδ- clone 4 have been described elsewhere [25 (link),42 (link),53 (link)]. Parasites were cultivated in vitro under standard conditions using RPMI 1640 medium supplemented with 10% heat-inactivated human serum and human erythrocytes at a 5% haematocrit [54 (link)]. Synchronous production of highly specific gametocytes stages was achieved according to described protocol [55 (link)]. For the isolation of gametocytes, culture medium was supplemented with 50mM (final concentration) N-acetylglucosamine (GlcNAc) from day 0 onwards and medium replacement was continued for 5 days to eliminate the asexual stages. Gametocyte preparations were enriched in different experiments by magnetic isolation using a MACS depletion column (Miltenyi Biotec) in conjunction with a magnetic separator.
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8

Synchronized Malaria Parasite Cultures

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The P. falciparum NF54 strain, the B10 clone and the transgenic lines pHLpfpkar, PfPDEδ, NF54-cg6-pfs16-CBG99 and NF54-pfs47-pfs16-GFP have been described elsewhere16 (link),23 (link),27 (link),42 (link). Parasites were cultivated in vitro under standard conditions using RPMI 1640 medium supplemented with 10% heat-inactivated human serum and human erythrocytes at a 5% hematocrit. To obtain synchronous asexual stages, parasites were synchronized by the isolation of schizonts by magnetic isolation using a MACS depletion column (Miltenyi Biotec) in conjunction with a magnetic separator, and placed back into culture. After invasion of merozoites, a second magnetic isolation was used for the selection of ring-stage parasites to obtain a tighter window of synchronization. Synchronous production of specific gametocytes stages was achieved by treating synchronized cultures at the ring stage (10–15% parasitemia, day 0) with 50 mM N-acetylglucosamine (NAG) for 5 days to eliminate asexual parasites. Gametocyte preparations were enriched in different experiments by magnetic isolation. Stage I GIE were collected at day 1 after initiating NAG treatment, stage II GIE were collected at days 2 and 3, stage III GIE were collected at days 4 and 5, stage IV GIE were collected at days 6 and 7, and stage V GIE were collected at day 8 onwards.
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