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16 protocols using ab263019

1

Exosomal Protein Characterization Protocol

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Exosomal was lysed in Cell lysis buffer containing 1 mM phenylmethylsulfonyl fluoride (Thermo Fisher Scientific, Shanghai, China), a protease inhibitor. Protein concentrations in isolated exosome fractions were measured using a BCA protein assay kit (Thermo Fisher Scientific, Shanghai, China) according to the manufacturer’s instructions. Protein samples were separated with SDS-PAGE, and transferred onto polyvinylidene fluoride membranes (Millipore, Billerica, MA) and blocked with 5% (M/V) skim milk. Primary antibodies were diluted in Antibody Diluent, and membranes were incubated with an antibody overnight at 4°C. antibodies specific for the designated antigens and purchased from Abcam, ShangHai, China: CD63 (1:1000, ab134045), CD9 (1:1000, ab263019), TSG101 (1:2000, ab125011). Next, After washing 3 times in TBST, Anti-rabbit IgG, HRP-linked Antibody (1:2000, Bioss, Beijing, China:) was added for 1 hour at room temperature, and blots were developed with ECL detection reagents (Thermo Fisher Scientific, Shanghai, China). Band intensities on exposed flms were quantifed using Image J software (NIH, USA).
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2

Western Blot Analysis of Myogenic and Exosomal Markers

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Cells or EVs were sonicated into the lysis buffer supplemented with phosphatase and protease inhibitors (KGP2100, Keygen Biotech, China). Proteins were transferred onto PVDF membranes. Then the PVDF membranes were blocked by 5% milk (P0216-1500 ​g, Beyotime, China) and incubated with primary antibodies against GAPDH (1:10000, HRP-60004, proteintech, USA), P16 (1:1000, ab51243, abcam, UK), P53 (1:2000, A10610, ABclonal, China), P21 (1:2000, A1483, ABclonal, China), myogenic differentiation antigen (MyoD) (1:100, ab203383, abcam, UK), myogenin (MyoG) (1:200, ab124800, abcam, UK), myosin heavy chain (MyHC) (1:1000, ab91506, abcam, UK), CD9 (1:1000, ab263019, abcam, UK), CD81 (1:1000, ab109201, abcam, UK), TGS101 (1:1000, ab125011, abcam, UK), and Calnexin (1:1000, ab133615, abcam, UK) at 4 ​°C overnight. Membranes were then incubated with goat anti-rabbit IgG(H ​+ ​L) HRP (70-GAR0072, MultiSciences, China) at 37 ​°C for 1 ​h. Subsequently, the immune complexes were visualized using a tanon™ high-sig ECL western blotting substrate (180-5001, Tanon, China) and automatic digital gel/chemiluminescence image analysis system (4600SF, Tanon, China).
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3

Protein Extraction and Western Blot Analysis

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Cellular proteins were extracted using radioimmunoprecipitation assay protein extraction reagent (Beyotime Biotechnology Co., Shanghai, China) containing a mixture of protease inhibitors and phenylmethylsulfonyl fluoride (Roche, Basel, Switzerland). And 30 μg protein was separated with 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Then the protein was transferred to a polyvinylidene fluoride membrane (EMD Millipore, Billerica, MA, United States), and blocked with 5% skim milk for 2 h. The membranes were incubated with specific antibodies at 4°C overnight, including rabbit anti-CD63 (1: 1000, ab134045, Abcam, Cambridge, United Kingdom), rabbit anti-CD9 (1: 1000, ab263019, Abcam), rabbit anti-GM130 (1: 1000, ab215966, Abcam), and rabbit anti-KPNA3 (1: 1000, ab137446, Abcam). GAPDH (1: 5000, ab181602, Abcam) was used as a control. Protein bands were visualized using the Millipore enhanced chemiluminescence Western Blotting Detection System (Millipore). The experiment was conducted in triplicates for three times independently.
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4

Exosome Protein Extraction and Analysis

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The Mixed RIPA buffer (R0010, Solarbio, Beijing, China) with phenylmethanesulfonyl fluoride (PMSF) (P0100, Solarbio) at 100:1 was used to lysis cells and exosomes. The extracted proteins were quantified using the BCA Protein Assay Kit (C503021, Sangon Biotech, Shanghai, China). The antibodies used in Western blot includes rabbit anti-human CD9 (ab263019, 1:1,000, Abcam), CD63 (ab134045, 1:2,000, Abcam), HSP70 (ab181606, 1:1,000, Abcam), TSG101 (ab125011, 1:2,000, Abcam), IRAK-1 (ab180747, 1:1,000, Abcam), TRAF-6 (ab33915, 1:2,000, Abcam), GAPDH (D110016, 1:5,000, Sangon Biotech), and horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG (D110058, Sangon Biotech). The relative expressions of the target proteins were normalized to GAPDH.
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5

Exosome Protein Profiling by Western Blot

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Cells or exosomes were lysed in radioimmune precipitation assay (RIPA) lysis buffer (Beyotime) containing protease inhibitor cocktails (Abcam). Protein concentration was determined with BCA Protein Assay Kit (Beyotime, China). A total of 20–30 μg of protein sample was subjected to SDS-PAGE gel, then transferred onto 0.22-mm polyvinylidene difluoride (PVDF) membranes (Millipore). The membrane was blocked in 5% non-fat milk for 2 h at room temperature and incubated with the corresponding primary antibodies at 4°C overnight, following by incubation with the horseradish peroxidase-conjugated (HRP) secondary antibody for 2 h at room temperature. Finally, the membrane was detected using FDbio-Femto ECL (Fudebio, Hangzhou, China) and a chemiluminescence system (Bio-Rad, USA). The primary antibodies for Western blot were anti-GAPDH (1:10,000; proteintech, 60004-1-Ig), anti-CD9 (1:1000; abcam, ab263019), anti-PTEN (1:1000; abcam, ab267787), anti-HSP70 (1:1000; abcam, ab181606) and anti-Calnexin (1:1000; abcam, ab133615), respectively.
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6

Profiling Extracellular Vesicle Proteins by Western Blot

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Cells cultured in Matrigel were collected and lysed with RIPA buffer (MCE) containing protease and phosphatase inhibitors (MCE). Protein concentrations were determined by the BCA Protein Assay Kit (23227, Thermo Fisher Scientific). Western blotting was conducted according to a standard protocol. Briefly, the proteins were loaded on 10% SDS-polyacrylamide gels and electrophoretically transferred to a PVDF membrane (Millipore). The primary antibodies were purchased as follows: p-Akt (1:1000, ABclonal, AP0637), Akt (1:1000, ABclonal, A17909), p-GSK3β (1:1000, ABclonal, AP1088), GSK3β (1:1000, ABclonal, A6164), β-CATENIN (1:1000, ABclonal, A19657), β-actin (1:1000, ABclonal, AC026), anti-CD9 (1:1000, Abcam, ab263019), anti-CD81 (1:1000, Abcam, ab109201), anti-Hsp70 (1:1000, Abcam, ab181606), anti-TSG101 (1:1000, Abcam, ab125011), anti-Calnexin (1:1000, Abcam, ab133615), anti-CD63 (1:1000, Abcam, ab134045). Detection was performed using a Chemiluminescent Western Blot detection kit (4AW012-1000, 4A Biotech). The western blot results were analyzed using ImageJ (version 1.52). Uncropped and unprocessed scans of the blots could be obtained from the source data file.
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7

Exosomal Protein Profiling in Colorectal Cancer

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The LoVo and SW480 cells or exosomes were collected, lysed with lysis solution (Roche) on ice for 30 min, and the total protein was separated by centrifugation at 14000 rpm for 30 min. Afterward, 50 μg total protein was loaded on 12% polyacrylamide gel and went through 2-hour electrophoresis at 100 V. The separated protein was then transferred to polyvinylidene fluoride (PVDF) membranes. After being blocked with 5% skimmed milk at room temperature (RT) for 1 hour, the membranes were washed with TBST 3 times (10 min each time) and incubated with the antibodies (all from Abcam, MA, USA) of CD9 (ab263019, 1: 1000), CD63 (ab271286, 1: 1000), HSC70 (ab76005, 1: 1000), THEM4 (ab106435, 1:1000), p-AKT (ab38449, 1:1000), AKT (ab8805, 1:500), p-NF-κB (phospho S536) (ab106435, 1: 1000), NF-kB (ab32536, 1: 1000), and GAPDH (ab8245, 1: 1000) at 4°C overnight. After the membranes were rinsed with TBST, they were incubated with horseradish peroxidase (HRP)-labeled anti-rabbit secondary antibody (concentration 1:300) for 1 hour at RT. Next, TBST was employed to wash the membranes 3 times (10 min each). At last, a Western blotting reagent (Invitrogen) was used for blots imaging, and the gray intensity of each protein was determined via Image J.
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8

Exosomal Protein Extraction and Characterization

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To extract total protein from plasma exosomes, exosomes were first exposed to Proteinase K treatment and were collected by Radio Immunoprecipitation Assay (RIPA) lysis buffer that contained protease inhibitor cocktail for a 30-min period on ice, followed by 10-min centrifugation at 13,000 × g and 4°C. Thereafter, this work adopted Pierce® BCA Protein Assay kit (Thermo Scientific, USA) in quantifying exosomal proteins. For the detection of the exosomal biomarker proteins, exosome lysates (30 μg) were separated on 12% tricine-Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), followed by electronic blotting on the 0.2-μM nitrocellulose (NC) membrane (Millipore). Later, Western blot (WB) assay was conducted with anti-CD63 (1:1,000, abcam, #ab134045), anti-CD9 (1:1,000, abcam, #ab263019), and anti-CD81 (1:1,000, abcam, #ab109201) antibodies. The Gel Imaging System (Syngene G: BOX F3, USA) was employed to observe signals.
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9

Western Blot Analysis of Exosomal Markers

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Proteins from serums or cells were isolated by RIPA buffer (Millipore) and quantified by a BCA protein assay kit (Tiangen, Beijing, China). Next, equal amounts of protein were separated via sodium dodecyl sulfonate-polyacrylamide gel (Solarbio) electrophoresis and then transferred onto polyvinylidene difluoride membranes (PVDF, Beyotime). After blocked with 5% defatted milk for 1 h at indoor temperature, the membranes were incubated with primary antibodies against OXSR1 (1:2000; ab97694; Abcam), CD9 (1:1000; ab263019; Abcam), CD63 (1:1000; ab134045; Abcam) and GAPDH (1:10,000; ab181602, Abcam) overnight at 4 °C. Then, the proteins on the membrane were probed with the secondary antibodies (1:20000; ab205718 or ab205719; Abcam) at 37 °C for 2 h. The protein blots were visualized using BeyoECL Star Kit (Beyotime).
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10

Exosome Protein Analysis by Western Blot

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Proteins from cells or exosomes were suspended in sodium dodecyl sulfate (SDS) loading buffer. After boiling, protein samples were separated on a 10% SDS-PAGE Gel and transferred to polyvinylidene fluoride membranes (Millipore, Darmstadt, Germany). Next, the membranes were incubated with primary antibodies against CD9 (ab263019, Abcam, Cambridge, UK), CD63 (ab134045, Abcam, Cambridge, UK), calnexin (ab133615, Abcam, Cambridge, UK), IL-1RA (ab124962, Abcam, Cambridge, UK), and β-Actin (TA-09, ZSGB-BIO, China) at 4 °C overnight, and then with secondary antibodies against rabbit (ZB-2301, ZSGB-BIO, China) or mouse (ZB-2305, ZSGB-BIO, China) for 1 h at RT. Finally, the signals were visualized.
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