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6 protocols using mmp12

1

Protease Secretion Profiles of Immune Cells

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Spleens were excised from RIP1‐Tag5 mice, minced and incubated in RPMI for 30 min at 37°C under gentle rotation and passed through a 70‐μm membrane. CD4+ and CD8+ T cells and CD11b+ monocytes/macrophages were isolated by MACS cell separation (Miltenyi Biotec). Cells (300,000 cells/well) were seeded onto Matrigel embedded with 0.4 μg CSG or 1 μg TNFα‐CSG, and were incubated with TexMACS™ (Miltenyi Biotec, T cells only) or RPMI (monocytes). The levels of proteases secreted in the supernatant at 4 and 20 h after seeding were measured by ELISA following the manufacturer's instructions. ELISA kits used include mouse MMP9 (BosterBio), MMP12 (Abcam) and cathepsin L (Cloud‐Clone Corp).
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2

Immunohistochemical Analysis of Lung Tissue

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For immunohistochemistry, lungs were fixed in paraformaldehyde and embedded into paraffin. After deparaffinizing in xylene and rehydrating in alcohol, the tissue was treated with 1.8% (v/v) H2O2 solution (Sigma-Aldrich, St. Louis, MO) to block endogenous peroxidase. Heat induced epitope retrieval was performed in HIER Citrate Buffer (pH 6.0, Zytomed Systems) in a Decloaking chamber (Biocare Medical, Concord, CA). To inhibit nonspecific binding of antibodies, tissue slides were treated with a rodent blocking antibody (Biocare Medical). After overnight incubation with primary antibodies against MMP12 (Abcam, Cambridge, UK), CD45R/B220 (BD Pharmingen), CD21 (Novus Biologicals, Littleton, CO), CD3 (Sigma Aldrich), p16 (Santa Cruz, CA) or SIRT1 (Millipore, Schwalbach, Germany) tissue slides were incubated with an alkaline phosphatase-labeled secondary antibody (Biocare Medical). Signals were amplified by adding chromogen substrate Vulcan fast red (Biocare Medical). Slides were counterstained with hematoxylin (Sigma-Aldrich) and dehydrated in xylene. Afterwards, coverslips were mounted.
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3

Proteomic analysis of pancreatic cancer

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Total proteins were extracted from PANC-1 and BxPC-3 cells using RIPA lysis buffer (Beijing Solarbio Science & Technology Co., Ltd.). The protein concentration was measured using a BCA protein assay kit (Beyotime Institute of Biotechnology). The protein samples (30 µg/lane) were separated by 10% SDS-PAGE and were then transferred onto PVDF membranes. Following blocking with 5% non-fat milk at room temperature for 2 h, the membranes were incubated with the appropriate primary antibodies against NPTX1 (catalog no. bs-4893R; 1:500; Bioss), Bcl-2 (catalog no. ab32124; 1:1,000), Bax (catalog no. ab32503; 1:1,000), cleaved PARP (catalog no. ab32064; 1:1,000), MMP12 (catalog no. ab52897; 1:1,000), ZEB1 (catalog no. ab203829; 1:500), RBM10 (catalog no. ab72423; 1:2,000) and GAPDH (catalog no. ab8245; 1:500) (all Abcam) at 4°C overnight. Subsequently, the membranes were incubated with the corresponding HRP-conjugated Goat Anti-Rabbit IgG secondary antibodies (catalog no. ab205718; 1:2,000; Abcam) for 2 h at room temperature. Finally, the protein bands were visualized by using an ECL reagent (Merck KGaA). The protein intensity was quantified with ImageJ software v1.8.0 (National Institutes of Health).
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4

Western Blot Analysis of Protein Expression

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Western blotting was performed essentially as previously described (17 (link)). The expression of CD137 (1:500, rat, Abcam, Cambridge, UK), ASK1 (1:2,000, rabbit, Abcam), phospho-ASK1 [1:500, rabbit, Cell Signaling Technology (CST), Danvers, MA, USA], p38 (1:1,000, rabbit, CST), phospho-p38 (1:1,000, rabbit, CST), JNK (1:1,000, rabbit, CST), phospho-JNK (1:1,000, rabbit, CST), IκBα (1:1,000, rabbit, CST), phospho-IκBα (1:1,000, rabbit, CST), MMP9 (1:1,000, rabbit, Abcam), MMP12 (1:2,000, rabbit, Abcam), and β-actin (1:1,000, rabbit, CST) in MH-S cells or lung tissues was measured by western blot. Protein expression was normalized to β-actin.
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5

Immunohistochemical Analysis of Tissue Markers

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After deparaffinization in xylene and subsequent rehydration in graded alcohol series, tissue sections were blocked by exposure to 3% H2O2 and boiled in a citrate buffer (pH 5.9–6.2) at 95°C for 20 min. After blocking in 5% BSA for 1 h at room temperature, tissue sections were incubated at 4°C overnight with antibodies to CD68 (1:200, rat, Abcam), MMP9 (1:200, rabbit, Servicebio, Wuhan, China), MMP12 (1:50, rabbit, Abcam), or collagen I (1:200, rabbit, Abcam). The sections were washed with phosphate-buffered saline, and then incubated with horseradish peroxidase secondary antibodies (Santa Cruz Biotechnology, Dallas, TX, USA) at room temperature for 2 h. A DAB kit (Santa Cruz) was used to perform the positive staining. Nuclei were stained by hematoxylin.
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6

Quantitative Kidney Histopathology Analysis

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Frozen kidney sections (5-μm thick) that were collected on slides were fixed and processed by hematoxylin and eosin and periodic acid schiff (PAS) staining (Sigma-Aldrich, St. Louis, MO, USA). The mesangial area was analyzed to determine the percentage of glomerular area (10 glomeruli per kidney per animal) using Image J software (National Institutes of Health, Bethesda, MD, USA). For immunohistochemistry, sections were fixed in pre-cooled acetone (−20 °C) for 5 min; after three washes in phosphate-buffered saline and a 10-min treatment with 3% H2O2, sections were serum-blocked and incubated with antibodies against MMP-12, CD68 (both from Abcam, Cambridge, MA, USA), FN, collagen IV (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), or nitrotyrosine (EMD Millipore, Billerica, MA, USA), followed by incubation with biotinylated anti-rabbit, anti-rat, or anti-mouse secondary antibody (Vector Laboratories, Burlingame, CA, USA), a streptavidin-horseradish peroxidase conjugate, and finally diaminobenzidine substrate for visualization (Vector Laboratories). For glomerular assessment, the percentage of mesangial area stained as glomeruli was quantitated using 10 glomeruli per kidney per animal, using Image J software.
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