The largest database of trusted experimental protocols

4 protocols using specific primer sets

1

RNA Extraction, cDNA Synthesis, and qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated by the Total RNA-extraction kit (Yeasen Biotech, Shanghai, China, #10606ES60) and converted to cDNA by High-Capacity Prime Script RT reagent (Yeasen Biotech, # 11121ES60) according to the appendant instruction. The sequent qPCR analysis was performed by the ABI StepOne TM Real-Time PCR System (Applied Biosystems, Foster City, CA, USA) with SYBR Green Supermix (Takara, Dalian, China, #RR420L). And for detecting the level of miR-760, qRT-PCR was conducted with the using of TaqMan miRNA assays accompanied with specific primer sets (Applied Biosystems).27 (link) The 2-ΔΔCt calculative method was selected for detection the relative change level of each specific gene. The chosen primer sequences (5′-3′) in the qPCR analysis were listed below:
NEAT1-F: 5′-GTTCCGTGCTTCCTCTTCTG-3′,
NEAT1-R: 5′-GTGTCCTCCGACTTTACCAG-3′,
miR-760-F: 5′-TCAATCCACCAGAGCATGGATAT-3′,
miR-760-R: 5′-CTCTACAGCTATATTGCCAGCCA-3′,
TPM1- F: 5′-GGCACCGAAGATGAACTGGACA-3′,
TPM1- R: 5′-GCGTCTGTTCAGAGAAGCTACG-3′,
GAPDH-F: 5′-GTCTCGTCTGACTTCAACAGCG-3′,
GAPDH-R: 5′-ACCACACTGTTGCTGTAGCCAA-3′,
U6–F: 5′-CTCGCTTCGGCAGCACT-3′,
U6-R: 5′-AACGCTTCACTAATTTGCGT-3’.
+ Open protocol
+ Expand
2

miRNA Expression Analysis by qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
miRNA expression analysis by qRT-PCR was performed separately for each miRNA using specific primer sets (Applied Biosystems) as previously described (19 (link)). RNU6B was used for normalization.
+ Open protocol
+ Expand
3

Profiling miRNA Expression by qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were trypsinized and total miRNA was extracted using a mirVana miRNA isolation kit (Ambion). miRNA expression analysis by qRT- PCR was performed separately for each miRNA using specific primer sets (Applied Biosystems) as previously described (15 (link)). RNU6B was used for normalization.
+ Open protocol
+ Expand
4

Murine FAE and VE miRNA Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA including the small RNA fraction was extracted from murine FAE and VE using a mirVana kit (Ambion) and was reverse transcribed with a Taqman MicroRNA Reverse Transcription Kit (Applied Biosystems). Quantitative PCR was performed to quantify miRNA expression levels using the TaqMan Universal PCR Master Mix II w/ UNG (Applied Biosystems) and the Thermal Cycler Dice Real Time System (TAKARA). Values were normalized relative to the small nucleolar RNA Sno202. Specific primer sets were purchased from Applied Biosystems.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!