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15 protocols using dfc450 c digital camera

1

Histological Analysis of Colon Tissues

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Colon tissues were fixed with 4% paraformaldehyde, dehydrated, embedded in paraffin, and cut into sections of 5 μm. Hematoxylin and eosin (H&E) staining kit (Beyotime Institute of Biotechnology, Shanghai, China) was used for slide staining. The production of intestinal mucins was assayed by staining with an Alcian Blue staining kit (Vectorlabs, Beijing, China) and fluorescein isothiocyanate conjugated-wheat germ agglutinin (WGA-FITC) immunofluorescence (Sigma Aldrich, MO, United States). The immunohistochemistry of colon tissues was analyzed using anti-ZO-1 (1:50, Cat #sc-33725) and anti-Claudin-1 (1:50, Cat #sc166338) antibodies. Images of colon structures were obtained by a Leica DMIL 4000B light microscope with a Leica DFC450C digital camera (Wetzlar, Germany).
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2

Quantifying Co-localization of Neuronal Markers

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For cFos, GFP, and Npas4 co-localization analyses, flat images were obtained using a 10x objective on a Leica microscope with a Leica DFC450 C digital camera (28 (link)). All images were converted to binary format, and watershed segmentation was used to separate overlapping cells. Cell counts from hippocampal subregions were performed using two sections per mouse (1.8 mm posterior to bregma and 2.2 mm posterior to bregma) and averaged between two sections. Within hippocampal sections, a 200 μm2 area of DG, a 200 μm2 area of CA3, and a 100 μm2 area of CA1 were defined. Only cells in a specific size range were counted, and a constant threshold was used to distinguish cells based on maximal signal to noise ratio. JACoP (Image J Plugin) object-based co-localization was used to determine co-localization by comparing the position of the centroids of the nuclei of the color channels. Their respective coordinates were then used to define structures separated by distances equal to or below the optical resolution. All quantifications were performed by an experimenter blind to treatment condition.
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3

Immunohistochemistry of Metastatic Tumor Model

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Immunohistochemistry (IHC) was performed using the Ptenlox5/lox5;SSM2/SSM2 metastatic mouse model. Tissue was stained using a rabbit anti-human/mouse polyclonal antibody targeting either Oncostatin M Receptor (OSMR) (ABclonal, Woburn, MA, USA. Cat.# A6681) or eGFP (Thermo Fisher, Carlsbad, CA, USA. Cat.# CAB4211). All other reagents were obtained from the Pierce Peroxidase Detection Kit (Thermofisher, Carlsbad, CA, USA. Cat.# 36000) and protocol was followed according to the manufacturer’s protocol. Briefly, a goat anti-rabbit secondary antibody was applied to the tissues, followed by an anti-goat strep-HRP tertiary antibody. Samples were counterstained with hematoxylin, dehydrated, and mounted. Slides were analyzed through a Leica DM6B widefield microscope and imaged with the attached Leica DFC450-C digital camera.
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4

Immunohistochemical Analysis of Metabolic Proteins

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Mammary tumor sections from our previous study (19 (link)) were de-paraffinized, hydrated, and immersed in boiling citrate retrieval buffer solution (pH 6.0) for 20–30 minutes followed by treatment with 0.3% hydrogen peroxide in 100% methanol for 20 minutes at room temperature. Sections were exposed to blocking buffer (PBS consisting of 5% normal goat serum) for 1 hour at room temperature followed by overnight incubation with anti-ACLY (1:200 dilution), anti-ACC1 (1:150 dilution), anti-FASN (1:250 dilution) or anti-CPT1A (1:50 dilution) antibody but 24 hour incubation with anti-granzyme B (1:200 dilution) and anti-perforin (1:44 dilution) antibody in humidified chambers at 4°C. Sections were washed with PBS, incubated with horseradish peroxidase-conjugated secondary antibody (1:150~400) for 2 hours at room temperature. Color was developed by incubation with 3,3’-diaminobenzidine tetrahydrochloride. Sections were counterstained with hematoxylin and examined under Leica microscope equipped with DFC 450C digital camera. The H-score was determined as described previously by us previously (18 (link)).
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5

Measuring Bone Marrow Adipocyte Density

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To examine the effect of dietary hempseed on the density of bone marrow adipocytes, immunohistochemistry staining for the marker PRDM16 protein was employed. This zinc finger transcription factor plays an important role in the differentiation of adipocytes within the bone marrow [45 (link),46 (link),47 (link)]. Tissue was stained using a rabbit anti-human polyclonal antibody targeting PRDM16 (ThermoFisher Scientific, Waltham, MA, USA; catalog #PA5-20872). All other reagents were obtained from the Pierce Peroxidase Detection Kit (ThermoFisher Scientific; catalog #36000) and the protocol was followed according to the manufacturer’s instructions. Briefly, a goat anti-rabbit secondary antibody was applied to the tissues, followed by an anti-goat strep-HRP tertiary antibody. Samples were counterstained with hematoxylin, dehydrated and mounted. Slides were analyzed for PRDM16-positive cells (staining intensity) using a Leica DM6B widefield microscope and imaged with the attached Leica DFC450-C digital camera. Quantitative values were obtained by counting PRDM16-positive cells (brown stain) and total cells (blue stain) in the bone marrow and calculating a percentage.
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6

Lung Histopathology and Morphometry Protocol

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For histopathological and morphometric analyses, the lungs were perfused with 5 mL of PBS containing 10% antibiotics (Penicillin-Streptomycin—Cat# 15140148, Gibco™, Waltham, MA USA) through the right ventricle of the heart. A fragment of the left lung was excised and immediately placed in the methacarn solution for fixation. After fixation, the lung fragments were dehydrated, clarified in xylol, embedded in paraffin, and sectioned. Thereafter, 5 µm-thick sections were prepared by slicing the tissue at 135 µm intervals. The sections were stained with hematoxylin and eosin (H&E), Grocott–Gomori methenamine silver (GMS), or mucicarmine (specific for Cryptococcus spp.) and evaluated using light microscopy (LMD6 system and motorized stage; Leica, Wetzlar, Germany; XYZ module LX; objectives HC PL FL 1.25×/0.04, 10×/0.30, 20×/0.40, 40×/0.60) and a DFC450 C digital camera (Leica). The images were processed using ImageJ Fiji open-source image processor software. Quantification of the number of yeast cells, average yeast area, yeast frequency, and compromised pulmonary parenchyma was performed in a semi-automated quantitative manner using ImageJ Fiji.
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7

Immunohistochemical Analysis of Lipogenic Enzymes

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Prostate sections (4–5 μm thick) were de-paraffinized, hydrated, washed with PBS, and incubated in citrate retrieval buffer solution (pH 6.0) for 20 minutes at 100°C followed by treatment with 0.3% hydrogen peroxide in 100% methanol for 20 minutes at room temperature. Immunohistochemistry was performed essentially as described by us previously [38 (link), 39 (link), 41 (link)]. Stained sections were examined under Nikon A1 confocal microscope or Leica microscope equipped with DFC 450C digital camera. Quantitation of immunofluorescence for ACLY, ACC1, and FASN protein expression intensity was performed using ImageJ software. For human prostate tumor tissue array, the H-score was analyzed by positive pixel count V9 algorithm using Aperio ImageScope software.
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8

Wound Healing Assay for Colon Cancer

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Colon cancer cell lines were grown in 6-well plates. Wounds were made in a confluent monolayer of each well by using a 10 μL pipette tip. The cells were then treated with 50 μg/mL of the methanolic, acetonic, or aqueous extract and the wound closure was compared with that of untreated cells at 0, 6, and 24 h after wounding [27 (link)]. Digital photographs were captured with a LEICA DFC450 C digital camera (LEICA Microsystems, DE). The percentage of wound closure was calculated through the comparison of the wound areas before and after stimulation using the following formula:
Wound closure (%) = (initial scratch size – size of the scratch after an identified culture period) / (initial scratch size) × 100.
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9

Microscopy Imaging Protocol for Biological Samples

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Light micrographs and fluorescence images for Figures 3-5 were obtained using a DMI4000 microscope equipped with a DFC450C digital camera and processed using the LAS-X software package (Leica Microsystems, Buffalo Grove IL). Fluorescent images were captured in monochrome mode and digital color applied to facilitate merging of images. Images for Figure 6 were captured on an Aperio Digital Scanner and processed using ImageScope software v.12.3 (Leica Microsystems, Buffalo Grove IL).
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10

Photographic Imaging of Plant Structures

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The images of Petri dishes and protonemal tissues including gametophores were photographed using a digital camera (EOS6D; Canon, Tokyo, Japan), a microscope over-eyepiece camera, or tereomicroscopes (MZ10F; Leica Microsystems, Wetzlar, Germany) fitted with a DFC450 C Digital Camera. The magnified images of gametangia and sporophytes were observed by inverted microscope (Axio Observer D1, Zeiss).
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