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13 protocols using orius sc200

1

Ptychographic Tomography with FEI Titan G2

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Data for ptychographic tomography was acquired using a FEI Titan G2 Cubed with two aberration correctors at an accelerated voltage of 60 kV. A beam with a convergence angle of 1.5 mrad and defocus of −40 μm was formed giving a diameter of 120 nm at the sample. Diffraction patterns were recorded using Gatan Orius SC200 camera with 2048 × 2048 pixels for a dwell time of 0.2 s. At each tilt angle, the electron beam was scanned in a 10 × 10 array over the sample with a scanning step of 20 nm to fulfil the overlap ratio required by ptychography. The sample was tilted about two mutually perpendicular axes from −49.99 to 53.94 degree and from −53.42 to 46.40 degree, respectively. A Fischione Model 2040 tomographic holder was used which has a maximum tilt angle of +/− 70° degree. However, for higher tilting angles, the sample was blocked by the copper grid. The tilt angle increment was approximate 10 degree. Defocus values as a function of the tilt angles are listed in Supplementary Table 1 and typical diffraction patterns and 2D ptychographic phases are shown in Supplementary Fig. 1 and Supplementary Fig. 2.
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2

Negative Staining Protein Visualization

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First, 15 μL of 34 μM protein solution was applied on a Formvar and carbon-coated grid. After 3 min, the sample was soaked away and stained with 1% (w/v) uranyl acetate. Samples were observed with a Philips CM 100 (FEI, Amsterdam, The Netherlands) transmission electron microscope operating at 80 kV. Images were recorded by Bioscan CCD or ORIUS SC 200 camera (Gatan Inc., Washington, DC, USA), using Digital Micrograph software (Gatan Inc., Washington, DC, USA). Two parallel grids were prepared for each sample, at least 10 grid squares were inspected thoroughly, and many micrographs were taken of each grid.
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3

Negative Staining Transmission Electron Microscopy

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The negatively stained sample grids as described above were observed and recorded with a JEM1230 TEM (JEOL, Tokyo, Japan) at an acceleration voltage of 100 kV, equipped with Orius SC200 or Bioscan CCD cameras (GATAN, Pleasanton, CA, USA).
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4

Transmission Electron Microscopy of AAVrh.10hCLN2

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Transmission electron microscopy was used for observation of viral particles in starting material and also after DNase treatment in experiment to evaluate different DNase concentrations. 10–20 μL of viral (AAVrh.10hCLN2) suspension was applied on freshly glow-discharged copper grids (400 mesh, formvar-carbon coated) for 5 min, washed and stained with 1 droplet of 1% (w/v) water solution of uranyl acetate. Grids were prepared in duplicates. The grids were observed with transmission electron microscope Philips CM 100 (FEI, Netherlands), operating at 80 kV. At least 10 grid squares were examined thoroughly and representative micrographs (camera ORIUS SC 200, Gatan, Inc.) were taken at different magnifications.
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5

Extracellular Vesicle Isolation and Characterization

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EVs were purified from coACCM and AF using the ExoQuick TC-ULTRA kit (System Bio, Palo Alto, CA, USA) or AF EVs were purified by ultracentrifugation with a Beckman XL-80 Ultracentrifuge (Beckman Coulter, Brea, CA, USA) and a SW41TI rotor by 107,000× g spin for 90 min at 4 °C. The resulting supernatant was collected as the EV-depleted fraction, and the pellet was washed twice with cold PBS, then resuspended in cold PBS and immediately stored at −80 °C or on ice then further analyzed. Qualitative and quantitative analysis of EVs was performed using nanoparticle tracking analysis (NTA) with the ZetaView particle analyzer model PMX-120 (Particle Metrix, Inning am Ammersee, Germany), transmission electron microscopy (see below), the Bradford method as described previously [72 (link)] (BioRad, Hercules, CA, USA), Western blotting (see below), and LC-MS/MS (see below).
For TEM either total AF, purified EVs from AF, or EV-depleted AF were applied to electron microscopic 200 mesh copper grids and negatively stained with 2% aqueous uranyl acetate. They were examined and measured in a JEOL JEM-1400 electron microscope at 80 kV. Images were acquired on bottom-mounted CCD camera Orius SC200 (Gatan, Pleasanton, CA, USA), and were used to measure the size, relative numbers, and shape of EVs.
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6

Visualizing HCoV-229E Virions by TEM

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HCoV-229E virions were visualized by transmission electron microscopy (TEM) through negative staining with 2% uranyl acetate (60 (link)). Briefly, 200-mesh Formvar carbon-coated copper grids (catalog no. FCF200-CU; Electron Microscopy Sciences) were treated for 20 min with HCoV-229E samples. Excess sample solution was then wicked off with filter paper, and each grid was then stained for 45 s with 2% uranyl acetate solution. Excess stain was again wicked off with filter paper. Grids were then dried and visualized on a Philips CM100 transmission electron microscope. Images were recorded with a Gatan Orius SC200 charge-coupled-device (CCD) camera. In order to ensure even counting, 10 pictures were taken on 3 different cells on each grid for each replicate. No more than 10 min was allotted for looking for virions in each cell.
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7

Ultrastructural Examination of Bacterial Cells

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The ultrastructure of the bacterial cells was examined using transmission electron microscopy. Overnight cultures were mixed with CgLAO (50 μg/mL) for 2 h and compared with untreated cells. The cells were fixed in 3% glutaraldehyde and 1% paraformaldehyde in 0.1 M phosphate buffer, post-fixed in 2% osmium tetroxide, and embedded in epoxy resin. Ultrathin sections were cut and examined under transmission electron microscopy (CM 100; Philips, Amsterdam, Netherlands), operating at 80 kV. Micrographs were recorded with a CCD camera (Orius SC 200; Gatan Inc., United States).
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8

TEM Characterization of MNP Size

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The size of the MNPs was assessed by transmission electron microscopy (TEM). TEM images were obtained using a Jeol Jem 2010 F30 microscope (JEOL USA, Inc., Peabody, MA, USA) operated at 200 kV. Samples for TEM were prepared by letting a drop of the samples dispersed in ethanol evaporate on top of a carbon-coated copper grid of 200 meshes. Micrographs were taken by a Gatan Orius SC200 high-speed digital camera (Gatan, Inc., Pleasanton, CA, USA).
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9

TEM Imaging of Protein Samples

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Protein samples (15 μL of 34 μM protein solution) were
applied on a Formvar and carbon-coated grid. After 3 min the sample
was soaked away and stained with 1% (w/v) uranyl acetate. Samples
were observed with a Philips CM 100 (FEI) transmission electron microscope
operating at 80 kV. Images were recorded by Bioscan CCD or ORIUS SC
200 camera (Gatan Inc.), using Digital Micrograph software (Gatan
Inc.). Two parallel grids were prepared for each sample, at least
10 grid squares were inspected thoroughly, and many micrographs were
taken of each grid.
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10

Morphological and Structural Analysis of MSPs

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The morphology and mesostructure of the MSPs were characterized using scanning electron microscopy (SEM) and transmission electron microscopy (TEM). SEM imaging was conducted using a field-emission electron microscope (Ultra Plus; Carl Zeiss, Jena, Germany) with an accelerating voltage of 1 kV. Samples for SEM imaging were deposited onto a gold membrane and sputter-coated prior to analysis. For TEM, ~4 µL of the liposome suspension was applied to the Formvar-coated 400-mesh copper TEM grid for 30 s. Before applying the sample, the grids were coated with an ~4 nm thick carbon layer and glow discharged (ACE200 vacuum coater; Leica, Munich, Germany). Samples were stained with 1% aqueous uranyl acetate and examined using a transmission electron microscope (CM100; Philips, Amsterdam, The Netherlands). Images were recorded with a CCD camera (Orius SC 200; Gatan, Pleasanton, CA, USA) using the Digital Micrograph software. X-ray diffraction (XRD) analysis (AXS D4 Endeavor; Bruker, Billerica, MA, USA) was carried out with Cu Kα radiation (λ = 0.154 nm) and a Sol-X detector. A scanning step of 0.02° and a counting time of 6 s per step were used for the measurements. The hydrodynamic size distribution, polydispersity index, and zeta-potential were measured using dynamic light scattering (ZetaSizer Nano ZSP; Malvern Instruments, Malvern, UK).
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