The largest database of trusted experimental protocols

Meca 79

Manufactured by Santa Cruz Biotechnology
Sourced in United States

MECA-79 is a monoclonal antibody that recognizes the mucosal addressin cell adhesion molecule-1 (MAdCAM-1). MAdCAM-1 is an adhesion molecule expressed on endothelial cells in the mucosal tissues, such as the intestine and mesenteric lymph nodes. MECA-79 can be used to detect and study the expression of MAdCAM-1 in various biological and research applications.

Automatically generated - may contain errors

6 protocols using meca 79

1

Tissue Microarray Immunohistochemistry Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue microarrays (TMAs) were constructed for immunohistochemistry. The tissue cores (2 mm) from two representative areas were punched and placed into the recipient blocks using a manual TMA device (SuperBioChips Laboratories, Seoul, Korea). Immunohistochemistry was performed using a Ventana Benchmark Autostainer (Ventana Medical System, Tucson, AZ, USA). Briefly, the slides were de-paraffinized, and antigen retrieval was conducted using heat-induced (92 °C for 30 min) epitope retrieval with an MC1 solution (Ventana Medical System, Tucson, AZ, USA). Sections were incubated with primary antibodies: CD8 (1:100, C8/144B, Dako, Cambridge, UK), Foxp3 (1:100, 236A/E7, Abcam, Cambridge, UK), CD20 (1:600, L26, Dako, Cambridge, UK), and MECA-79 (1:200, Santa Cruz, Tucson, AZ, USA). The Ultraview Polymer Detection Kit (Ventana Medical System, Tucson, AZ, USA) was used for visualization, and the stained sections were counterstained with hematoxylin. Human tonsil tissue was used as the positive control tissue. A negative control was performed by replacing the primary antibody with normal serum.
+ Open protocol
+ Expand
2

Immunohistochemical Analysis of Lymphoid Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Formalin-fixed paraffin-embedded tissues were sectioned (4 μm) and stained with hematoxylin and eosin (H&E) for histological analysis or used for immunohistochemistry (IHC). For IHC, endogenous peroxidases were inactivated by 3% hydrogen peroxide and nonspecific signals were blocked by 1% BSA. Sections were incubated with the primary antibody: CD20 (1:200, #MA5-13141, Invitrogen), CD3 (1:200, #ab16669, Abcam), MECA-79 (1:100, #sc-19602, Santa Cruz), CD21 (1:100, #sc-13135, Santa Cruz), CD23 (1:100, #MA5-14572, Invitrogen), TCL1A (1:500, #ab108978, Abcam), PAX5 (1:1000, #ab109443, Abcam), TNFRSF13C (1:300, #ab168389, Abcam), CD79A (1:200, #ab79414, Abcam) at 4°C overnight, HRP-conjugated secondary antibody at 37°C for 1 h, and subsequently stained with DAB substrate. Counterstaining was performed with hematoxylin and mounted with a mounting medium.
+ Open protocol
+ Expand
3

Immunohistochemical Analysis of Uterine Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Uteri were fixed overnight in 4% paraformaldehyde (PFD) before being processed and dehydrated through increasing concentrations of ethanol, cleared in chloroform and blocked in a paraffin wax. Tissues were cut into 5 µm sections, deparaffinized in xylene, rehydrated in reducing concentrations of ethanol. Tri-sodium citrate (pH 6.0) was used for antigen retrieval, while 1% H2O2 in PBS was used to neutralize the endogenous peroxidase. Sections were blocked in 5% BSA for non-specific binding, prior to incubation with rat monoclonal primary antibody: MECA-79 (200 μg/0.1ml, 1:500) (Santa Cruz, SC 19602) in 5% BSA at room temperature for 1 h. After rinsing with PBS, sections were incubated with biotinylated secondary antibody for 30 min at room temperature and were then exposed to avidin and biotinylated HRP complex (Santa Cruz, California, USA) in PBS for another 30 min. The site of antibody binding was visualized by DAB (Diaminobenzidine HCl) (Santa Cruz, California, USA) which gave dark brown stains. Sections were counterstained with hematoxylin for nuclear staining. In this experiment, non-immune normal donkey serum was used as a negative control where no staining was observed.
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of Tumor-Infiltrating Lymphocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
The tissue samples were fixed in formalin and embedded in paraffin, and the paraffin blocks were sliced into 4 µm sections to conduct immunohistochemical (IHC) staining. Six serial sections of each paraffin-embedded tumor block were cut, one for H&E staining and five for IHC staining. The primary antibodies for TIL subsets were mouse monoclonal anti-human CD8 (DakoCytomation, Glostrup, Denmark; 1 : 100 dilution), granzyme B (Novocastra, Newcastle, UK; 1 : 100), OX40 (Novocastra; 1 : 30), FOXP3 (Abcam, Cambridge, UK; 1 : 50). The identification for the TLSs was the primary antibody to MECA-79 (1 : 300 dilution, Santa Cruz, California, USA), which recognizes sulfate-dependent carbohydrate epitopes of peripheral node addressin (PNAd) expressed in endothelial cells of HEVs. The IHC was performed as recommended by the manufacturer. The antigen retrieval was done by heat-induced epitope retrieval methods for 1 min and 30 s in citric buffer (pH 6.0). The detailed steps were the same as in our previous study [26 (link)]. Dako EnVision (DakoCytomation, Denmark) was used as the secondary antibody. Negative controls were done by omitting the primary antibodies. The tonsil tissue was used as positive controls.
+ Open protocol
+ Expand
5

Quantifying Tumor Immune Infiltration

Check if the same lab product or an alternative is used in the 5 most similar protocols
Among the 108 cases, formalin-fixed paraffin-embedded (FFPE) tissue samples were available for 55 cases, which were analyzed by IHC and mRNA expression. The FFPE tissue sections were stained using an automatic immunohistochemical staining device (Benchmark XT, Ventana Medical Systems, Tucson, AZ). The antibodies to CD3 (1:50, Novocastra Laboratories, Newcastle upon Tyne, UK), CD8 (1:400, Dako, Glostrup, Denmark), CD20 (1:500, Novocastra Laboratories), and MECA79 (1:200, Santa Cruz Biotechnology, Dallas, TX; recognizes sulfate-dependent carbohydrate epitopes of PNAd expressed in endothelial cells of HEVs), were used. The total number of MECA79-positive blood vessels in each slide were counted manually.
The immunostained slides were scanned using a digital microscopy scanner (Pannoramic 250 FLASH, 3DHISTECH Ltd., Budapest, Hungary). The entire tumor area was selected in whole slides. In each case, the images were then scanned using computer viewer software (Pannoramic Viewer 1.15.2, 3DHISTECH Ltd.) and the number of CD3-, CD8-, and CD20-positive lymphocytes were counted in the tumor area using the NuclearQuant module. The positive cell densities were calculated by dividing the immuno-positive cell numbers by the tumor area.
+ Open protocol
+ Expand
6

Immunofluorescence Tissue Staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
Five-micron sections of tissue were cut by cryosectioning and stained with conjugated or purified antibodies. Purified antibodies were detected using secondary antibodies. The antibodies used were FITC anti-CD41 (clone MWReg30, BioLegend), or APC anti-CD41 (clone, MWReg30, BioLegend), anti-Lyve1 (rabbit polyclonal; Abcam), anti-PROX1 (rabbit polyclonal, clone Poly19252, BioLegend), FITC anti-CD61 (#M031-1, Emfret), FITC anti-CD42b, (#M040-1, Emfret), FITC anti-CD62P (clone CLB-Thromb/6, Beckman), anti-GPIbβ (CD42c, #M050-0, Emfret), MECA79 (Santa Cruz, sc-19602), anti-PDPN (Abcam, ab11936), anti-Mast Cell Chymase (Proteintech, 18189-I-AP). The sections were visualized using the Evos FL Auto 2 microscope from Invitrogen (Thermo Fisher Scientific) for whole images and Nikon confocal microscope for high-resolution images.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!