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16 protocols using anti egfr

1

Kinase inhibitor LY294002 in cancer research

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Kinase inhibitor LY294002 was purchased from Beyotime Institute of Biotechnology (Shanghai, China). CCK-8 kit was purchased from Dojindo Molecular Technologies (Kumamoto, Japan). FUT7 expression construct and the blank vector were designed and synthesized by GenePharma (Shanghai, China). anti-AKT, anti-EGFR, anti-mTOR and anti-PCNA antibodies were purchased from Proteintech (Wuhan, China); anti-pEGFR, anti-pAKT (ser473) and anti-pmTOR (ser2448) antibodies were purchased from Bioworld Technology, Inc (St Louis Park, MN, USA); anti-FUT7 monoclonal antibody was purchased from Sigma-Aldrich Co. (St Louis, MO, USA) and anti-sLeX antibody was purchased from Merck Millipore (Billerica, MA, USA).
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2

Western Blot Analysis of Signaling Proteins

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Cells were harvested and lysed in SDS lysis buffer (PMSF, Protease, and Phosphatase Inhibitor Cocktail added) for 30 min at 4°C. Total protein was extracted from tissues with T-PER Tissue Protein Extraction Reagent (Pierce, Rockford, IL, USA) according to the manufacturer's protocol. The proteins were dissociated and separated by SDS/PAGE and then transferred to PVDF membranes, which were incubated with primary antibodies. The primary antibodies used for western blotting and their sources were as follows: anti-SEMA3C (Proteintech, 19242-1-AP), anti-GAPDH (Proteintech, 60004-1-Ig), anti-p-ERK1/2 (Cell Signal Technology, #4370), anti-ERK1/2 (Cell Signal Technology, #4695), anti-p-EGFR (Cell Signal Technology, #3777), anti-EGFR (Proteintech, 18986-1-AP), anti-p-Her2 (Cell Signal Technology, #2244), anti-Her2 (Cell Signal Technology, #2244), anti-Her2 (Proteintech, 18299-1-AP), anti-p-MET (Cell Signal Technology, #3077), anti-MET (Proteintech, 25869-1-AP), anti-p-SRC (Cell Signal Technology, #6943), and anti-SRC (Proteintech, 11097-1-AP). Antigen-antibody complexes were detected using horseradish peroxidase-conjugated secondary antibodies (Cell Signaling Technology #7074; #7076) with enhanced chemiluminescence (ECL) western blot detection reagent (Merck Millipore) according to the manufacturer's protocol.
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3

Immunofluorescence Analysis of TRIP13 and EGFR in NSCLC Cells

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The NSCLC cells were cultured on coverslips in 24-well plates. After 24 h, the cells were fixed for 20 min with 4% paraformaldehyde and permeabilized for 10 min with 0.1% Triton X-100 (Beyotime Institute of Biotechnology). The slides were washed three times with PBS, blocked with bovine serum albumin (Beijing Solarbio Science & Technology Co., Ltd.) for 2 h at 25°C, and incubated overnight at 4°C with anti-TRIP13 (1:50; cat. no. 19602-1-AP; ProteinTech Group, Inc.), or anti-EGFR (1:50; cat. no. ab52894; Abcam). The cells were then washed again and incubated for 2 h at 25°C with tetramethylrhodamine (TRITC; 1:50; cat. no. SA00007-1; ProteinTech Group, Inc.) or FITC-conjugated secondary antibodies (1:50; cat. no. SA00003-8; ProteinTech Group, Inc.), and cell nuclei were counterstained with DAPI (Beyotime Institute of Biotechnology) for 10 min. An Olympus FV1000 laser scanning confocal microscope (Olympus Corporation) was used for the immunofluorescence analysis.
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4

Western Blot Analysis of Exosomal Markers

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Whole cell lysates and EVs (4 × 108 EVs) were derived from PalmReNL-HEK293FT cells and mixed with 4× sample buffer (Bio-Rad (Hercules, CA, USA)) with β-mercaptoethanol for detecting Alix, CD9, TSG101, and tdTomato proteins. Whole cell lysates derived from MDA-MB-231 cells were mixed with 2× sample buffer without β-mercaptoethanol (non-reducing conditions) for detecting PDL1, uPAR, EGFR, and GAPDH. Proteins were separated on a 4–20% Mini-PROTEAN TGX gel (Bio-Rad) and transferred to a polyvinylidene difluoride membrane (Millipore, IPFL00010). After blocking with 5% non-fat dry milk at RT for 1 h, membranes were probed with primary antibodies overnight at 4 °C at dilutions recommended by the suppliers as follows: anti-Alix (Proteintech (Rosemont, IL, USA), 12422-1-AP), anti-TSG101 (Proteintech, 14497-1-AP), anti-CD9 (Proteintech, 60232-1-lg), anti-RFP (Rockland Immunochemicals (Pottstown, PA, USA), 600-401-379), anti-PDL1 (Proteintech, 66248-1-lg), anti-uPAR (Proteintech, 10286-1-AP), anti-EGFR (Proteintech, 18986-1-AP), or anti-GAPDH (Santa Cruz (Santa Cruz, CA, USA), G-9), followed by incubation with horseradish peroxidase (HRP)-conjugated secondary antibodies at RT for 1 h. The membranes were visualized with ECL select Western Blotting Detection Reagent (GE Healthcare (Chicago, IL, USA), RPN2235) on ChemiDoc MP Imaging System (Bio-Rad).
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Western Blot Analysis of Apoptotic Markers

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Total protein from AGS and HGC27 cells was extracted using commercial kit, and the protein concentration was determined with BCA method. The samples were subjected to SDS–PAGE, and were transferred to the PDVF membrane that were placed in 5% BSA solution (ThermoFisher Scientific, MA, USA). The primary antibodies were incubated at four degrees overnight. The primary antibodies utilized in the experiments included anti-BAX (Proteintech, 50599-2-Ig, 1:1000), anti-β-action (Proteintech, 66009-1-Ig, 1:5000), anti-Bcl-2 (Proteintech, 68103-1-Ig, 1:1000), anti-PARP (Cell Signaling Technology, #9532, 1:1000), anti-Cleaved PARP (Cell Signaling Technology, #5625, 1:1000), anti-Caspase-3 (Cell Signaling Technology, #14220, 1:1000), anti-Cleaved Caspase-3 (Cell Signaling Technology, #9664, 1:1000), anti-PI3K (Affinity, AF6241, 1:1000), anti-p-PI3K (Affinity, AF3242, 1:1000), anti-AKT (Cell Signaling Technology, #4691, 1:1000), anti-p-AKT (Cell Signaling Technology, #4060, 1:1000), anti-EGFR (Proteintech, 66455-1-Ig, 1:1000), Anti-Cyt C (Proteintech, 10993-1-AP, 1:1000). The secondary antibodies were added and incubated at room temperature for 1 h. Finally, the bands were visualized using the IMAGE J software, with β-action serving as the internal standard.
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6

Western Blot Analysis of Protein Markers

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Whole cell proteins were harvested and the protein concentrations were measured using a BCA kit (Pierce; Thermo Fisher Scientific, Inc). And equal protein (30 μg) was separated with 10% SDS‐PAGE and transferred onto nitrocellulose membranes (EMD Millipore), subsequently, the membranes were then blocked in 5% non‐fat dry milk for 2 hours at room temperature. The membrane was incubated with primary antibodies at 4°C overnight, and the membrane was washed with TBST and incubated with anti‐HPR‐conjugated Affinipure goat anti‐rabbit/mouse lgG(H+L) (1:5000, Proteintech Group, Inc). The signals were detected using an ECL Western blotting kit. The primary antibodies used included: Anti‐B3GNT5 (1:500), anti‐GAPDH (1:3000), anti‐cyclinD1 (1:500), anti‐cyclinB1 (1:500 proteintech), anti‐EGFR (1:1000) (Proteintech Group, Inc) anti‐ERK (1:1000), anti‐p‐ERK (1:500) (Cell Signaling Technology, Inc); AKT (1:1000, Beyotime Institute of Biotechnology) and p‐AKT(Ser473) (1:500, Beyotime Institute of Biotechnology).
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7

Immunofluorescence Imaging and Proximity Ligation Assay

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Immunofluorescence was performed as previously described36 (link). Images were taken using ZEN2010 on Zeiss LSM-780 confocal microscopy. Co-localization analysis was performed using ZEN2.3 software. The following primary antibodies were used: anti-Flag (1:200, Sigma-Aldrich, F3165), anti-HA (1:200, Roche, 11867423001), anti-GM130 (1:200, Cell Signaling Technology, #12480 s), anti-GM130 (1:200, BD, 610822), and anti-EGFR (1:100, Proteintech, 18986-1-AP). The secondary antibodies were: Donkey anti-Mouse IgG Alexa Fluor 488 (Thermo Fisher Scientific, A21202), Goat anti-mouse IgG Alexa Fluor 647 (Thermo Fisher Scientific, A21236), Goat anti-Rat IgG Alexa Fluor 594 (Thermo Fisher Scientific, A11007), Donkey anti-Rabbit IgG Alexa Fluor 647 (Thermo Fisher Scientific, A31573), and Goat anti-Rabbit IgG Alexa Fluor Plus 555 (Thermo Fisher Scientific, A21429). FITC or Rhodamine-labeled phalloidin (1:80, ABclonal Technology, RM02836, RM02835) were used to stain F-actin to indicate localization of plasma membrane. For the Proximity ligation assay, Rabbit anti-HA antibody (1:200, Cell Signaling Technology, #3724) and mouse anti-Flag antibody (1:200, Sigma-Aldrich, F3165) were used as primary antibodies. Duolink® In Situ Red Starter Kit Mouse/Rabbit (DUO92101, Sigma-Aldrich) was used following the manufacturer’s instructions.
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8

Western Blotting of Protein Biomarkers

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Western blotting was performed as previously described [29 (link)]. Protein samples were separated by SDS–PAGE electrophoresis and transferred onto polyvinylidene fluoride (PVDF) membranes. Then, the PVDF membranes with proteins were incubated with 5% nonfat milk, specific primary antibodies at 4 °C overnight, and secondary antibodies (1:5000, BA1050, BA1054, Boster, Wuhan, China) in sequence and detected using ECL reagent. The primary antibodies were as follows: anti-Annexin A1 (1:1000, 32,934, Cell Signaling Technology), anti-E-cadherin (1:1000, ab231303; Abcam, Cambridge, U.K.), anti-vimentin (1:1000, ab20346; Abcam), anti-MMP9 (1:1000, ab76003; Abcam), anti-EGFR (1:1000, 66,455–1-Ig; Proteintech), anti-phospho-EGFR (1:1000, 3777, Cell Signaling Technology), anti-AKT(1:1000, 4685, Cell Signaling Technology), anti-phospho-AKT (1:1000, 4060, Cell Signaling Technology), anti-ERK (1:1000, 4659, Cell Signaling Technology), anti-phospho-ERK (1:1000, 4370, Cell Signaling Technology), anti-STAT3, anti-phospho-STAT3, anti-GAPDH (1:10,000, 60004–1-Ig; Proteintech), and anti-alpha tubulin(1:10,000, 66031-1-Ig; Proteintech) antibodies.
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9

EGFR Signaling Pathway Analysis

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Anti-p-EGFR 1/2 (Y1068) (1:1,000, #3777s), anti-p-Erk (T202/Y204) (1:1,000, #4370s), anti-Erk (1:1,000, #4695s), anti-p-stat3 (Y727) (1:1,000, #9136), anti-stat3 (1:1,000, #4904), anti-p-Akt (S473) (1:500, #4060s), anti-PARP (1:1,000, #9532s), and anti-Cleaved PARP (1:1,000, #5625s) were purchased from Cell Signaling Technology. Anti-EGFR (1:1,000, 18986-1-AP), anti-Akt (1:1,000, 10176-2-AP), and anti-tubulin (1:1,000, 66031-1-Ig) were purchased from Proteintech. Anti-Flag (1:1,000, Mouse IgG, F1804), polybrene, and cycloheximide (CHX) were purchased from Sigma-Aldrich. Osimertinib and gefitinib were purchased from MedChemExpress (MCE).
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10

Dihydrotanshinone I Inhibits Hepatocellular Carcinoma

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Human hepatocellular carcinomas cells Huh-7 and HepG2 were cultured in 6-well plates and cultured overnight. Then we treated with dihydrotanshinone I (0, 2.5, and 5.0 µM) for 48 h. Cells were lysed with lysis buffer and the protein concentrations were determined by Bradford assay (Bio-Rad, Hercules, CA, USA). Samples were then subjected to 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a PVDF membrane (0.25 µm, Millipore, Burlington, MA, USA). The membrane was blocked in fresh 5% nonfat milk for 1.5 h at room temperature. Samples were followed incubated with anti-p-EGFR (CST, D38B1, 1:1000), anti-EGFR (CST, D7A5, 1:1000), anti-p-STAT3 (CST, D3A7, 1:1000), anti-STAT3 (CST, 124H6, 1:1000), anti-p-AKT (CST, 11E7, 1:1000), anti-BAX (CST, 41162S, 1:1000), anti-Bcl2 (CST, 15071S, 1:1000) and anti-AKT (Proteintech, 66444, 1:1000) primary antibodies at 4 °C overnight. After washing with PBST (3 × 10 min), samples were incubated with peroxidase-conjugated secondary antibodies (7076S and 7074S) for 1.5 h. Finally, proteins were detected using an enhanced chemiluminescence detection kit (Bio-Rad, Hercules, CA, USA).
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