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10 protocols using em pact2 high pressure freezer

1

Preparing C. elegans Embryos for Electron Tomography

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Samples for electron tomography were prepared as described (Woog et al., 2012 (link)). Briefly, hermaphrodites were dissected in Minimal Edgar’s Growth Medium (Edgar, 1995 (link)) and embryos in early meiosis were selected and transferred to cellulose capillary tubes (Leica Microsystems, Vienna, Austria) with an inner diameter of 200 μm. The embryos were observed with a stereomicroscope, transferred to membrane carriers at appropriate stages, and immediately cryo-immobilized using an EMPACT2 high-pressure freezer (Leica Microsystems) equipped with a rapid transfer system (Pelletier et al., 2006 (link)). Freeze substitution was performed over 3 days at −90°C in anhydrous acetone containing 1% OsO4 and 0.1% uranyl acetate using an automatic freeze substitution machine (EM AFS, Leica Microsystems). Epon/Araldite-infiltrated samples were then embedded in a thin layer of resin and polymerized for 3 days at 60°C. Embedded embryos were re-mounted on dummy blocks and serial semi-thick (300 nm) sections were cut using an Ultracut UCT Microtome (Leica Microsystems). Sections were collected on Formvar-coated copper slot grids and post-stained with 2% uranyl acetate in 70% methanol followed by Reynold’s lead citrate.
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2

High-Pressure Freezing of Cells

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A schematic representation of the preparation method used is shown in Fig. 2. For high pressure freezing, the cells were spun in an Eppendorf tube to form a pellet, resuspended in an equal volume of media containing 10% BSA, and maintained at 37 °C. For loading into membrane carriers, a volume of cells was spun down in a blocked 200 μl pipette tip. After cutting away the end of the tip, the cells were pipetted into membrane carriers, loaded into the EMPACT2 high pressure freezer using the rapid transfer system (Leica Microsystems, Vienna) and high pressure frozen. Carriers containing frozen cells were stored under liquid nitrogen.
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3

High-pressure freezing of C. elegans embryos

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Wild-type N2 C. elegans hermaphrodites were dissected in M9 buffer, and single embryos early in mitosis were selected and transferred to cellulose capillary tubes (Leica Microsystems, Vienna, Austria) with an inner diameter of 200 μm. The embryos were observed with a stereomicroscope until either metaphase or anaphase and then immediately cryo-immobilized using an EM PACT2 high-pressure freezer equipped with a rapid transfer system (Leica Microsystems, Vienna, Austria)56 (link). Freeze substitution was performed over 3 days at −90 °C in anhydrous acetone containing 1% OsO4 and 0.1% uranyl acetate using an automatic freeze substitution machine (EM AFS, Leica Microsystems, Vienna, Austria). Epon/Araldite infiltrated samples were flat embedded in a thin layer of resin, polymerized for 3 days at 60 °C, and selected by light microscopy for re-mounting on dummy blocks. Serial semi-thick sections (300 nm) were cut using an Ultracut UCT Microtome (Leica Microsystems, Vienna, Austria). Sections were collected on Formvar-coated copper slot grids and poststained with 2% uranyl acetate in 70% methanol followed by Reynold's lead citrate57 (link).
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4

High-Pressure Freezing and Cryo-Electron Microscopy of C. elegans Mitotic Spindle

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We used samples that were previously obtained for a 3D reconstruction of the first mitotic spindle in C. elegans46 (link). Briefly, C. elegans N2 (wild type) gravid adults were dissected in M9 buffer, and zygotes in early mitosis were collected in cellulose capillary tubes (Cat# 16706869, Leica Microsystems) (Pelletier et al., 2006). The embryos were observed under a stereoscope until metaphase was reached and then immediately frozen using an EMPACT2 high-pressure freezer equipped with a rapid transfer system (RTS, Leica Microsystems). Freeze substitution of the cryo-immobilized embryos was done over three days in anhydrous acetone containing 1% OsO4 and 0.1% UA using freeze-substitution equipment (EM AFS, Leica Microsystems, (Pelletier et al., 2006)). Epon/Araldite infiltration was followed by thin-layer embedding and polymerization for three days at 60°C. After remounting the specimens on dummy blocks, serial semi-thick sections (300 nm) were cut using an ultramicrotome (Ultracut UCT, Leica Microsystems). Sections were collected on a Formvar-coated copper slot grids (EMS) and post-stained with 2% UA (in 70% methanol) followed by brief exposure to Reynold’s lead citrate Error! Hyperlink reference not valid..
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5

Ultrastructural Analysis of Hydrogels

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Cornea A1 and one half of a RHCIII and a RHCIII-MPC hydrogel underwent standard processing for TEM, whereby the specimen was dehydrated through an ascending ethanol series before being embedded in Araldite resin and polymerised at 60 °C for 24 h. The other half of the RHCIII and RHCIII-MPC hydrogels were processed for TEM using a high pressure freezing technique specifically designed to avoid preparation artefacts that may occur during standard TEM processing [29] (link). These samples were trimmed to 1.2 mm and rapidly cryofixed in a Leica EMPACT2 high pressure freezer. Frozen specimens were freeze substituted at −80 °C in 2% Osmium/Acetone for 24 h, and embedded in Araldite resin at 20 °C. From each embedded/frozen specimen, ultrathin sections (∼110 nm thick) were cut with a diamond knife on a Leica Ultracut UC6 ultramicrotome. Sections were collected on peloform-coated slot grids, stained with saturated aqueous uranyl acetate for 30 min at room temperature, Lead citrate for 7 min, and examined at 80 kV in a JEOL 1010 transmission electron microscope (Japan) equipped with a bottom-mount 14-bit CCD camera (Orius SC1000 Gatan, Pleasanton, CA).
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High-Pressure Freezing and Freeze-Substitution of Yeast Cells

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Sample preparation was carried out as previously described [31 (link)] with some modifications. After transfer to flat specimen carriers containing 1% lecithin in chloroform, treated and untreated yeast cells were frozen in an EM PACT2 high-pressure freezer (Leica, Leica Camera, Wetzlar, Germany). Samples were then freeze-substituted in an automatic FS machine (Leica) in 100% acetone/2% osmium tetroxide as follows: 96 h at −90 °C, increased 5 °C per hour for 14 h, 24 h at −20 °C, increased 3 °C per hour for 8 h, then 18 h at 4 °C. Substituted samples were washed 3 times (15 min each time) at room temperature in 100% acetone, infiltrated in 1:2 (v:v), 1:1 (v:v) and 2:1 (v:v) Epon/acetone mixtures for 1 h each and embedded in pure Epon. A Reichert-Jung Ultracut E ultramicrotome was used to cut ultra-thin sections, which were stained with uranyl acetate and lead citrate. A JEM-1011 transmission electron microscope (JEOL, Tokyo, Japan) operating at 80 kV was used to examine colony sections. Fine structure measurements were performed using a Veleta camera and iTEM 5.1 software (Olympus Soft Imaging Solution GmbH, Olympus, Münster, Germany).
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7

Cryo-Preparation of Platelets for Electron Microscopy

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Following final fixation in 2.5% glutaraldehyde, platelets were high pressure frozen using a Leica EM PACT2 high pressure freezer with rapid transfer system. Samples were transferred under liquid nitrogen to cryovials containing 2% osmium tetroxide/0.1% glutaralde-hyde/1%H2O in acetone. Samples were freeze substituted in a Leica EM AFS2 freeze substitution and low temperature embedding system under the following schedule: −90 ° C for 40 h, warm 3°C/h to −60°C, −60°C for 8 h, warm 3°C/h to −30°C, −30°C for 8 h, warm 3°C/h to 0°C. Following freeze substitution, samples were rinsed three times in acetone followed by tannic acid at 4°C (1% tannic acid with 1% H2O in acetone) for 1 h. Samples were rinsed three times in acetone followed by 1 h osmium wash (1% osmium tetroxide/1% H2O solution in acetone) at 4°C. Samples were rinsed 3x in acetone and embedded in resin starting at a 25% concentration.
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8

Ultrastructural Localization of Proteins

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Transfected cell cultures (2.5 h and 5 h) were vitrified using an EMPact2 high-pressure freezer (Leica) and freeze substituted in a temperature-controlling device (Reichert AFS) into Lowicryl HM20 resin (Electron Microscopy Sciences, Pennsylvania) following the protocol of Hawes et al. (63 (link)). The freeze substitution medium contained 2% (wt/vol) uranyl acetate, 0.25% glutaraldehyde, 10% (vol/vol) dry methanol, 89% dry acetone, and 1% water. Double labeling was performed on ultratyin sections mounted on Formvar-coated copper grids using anti-GFP antibody labeled with rabbit anti-goat 6-nm gold particles (EMS) and anti-J2 antibody labeled with donkey anti-mouse (10 nm; EMS).
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9

Immunogold Labeling of HeLa Cells

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HeLa cells were grown in a 6-well plate and siRNA treated for 65 h, trypsinized and pelleted for 1 min at 1,000g in cell culture media containing 5% FBS and 20% BSA. Cells were then immediately cryofixed using a Leica EM PACT2 high pressure freezer and then further processed as described34 , except that tannic acid was omitted from the freeze substitution medium. Blocks were sectioned on a Leica UC7 ultramicrotome using a diamond knife (Diamtome). 90-nm sections were transferred to 200-mesh Nickel grids and then immunolabelled as follows: grids were floated section side down on a 20 μl droplet of blocking solution (10% goat serum in TBS) for 15 min, then blotted and incubated on a droplet of primary (J2) antibody (diluted 1:25 in buffer A (1% BSA, 1% goat serum, 0.01% Tween-20 in TBS)) for 2 h at room temperature. Grids were washed by passing them over five droplets of buffer A, 5 min each, then incubated with secondary antibody (ab27242, goat anti-mouse conjugated to 20 nm gold) diluted 1:10 in buffer A for 90 min at room temperature, then washed by passing over three droplets of water. Sections were then post-stained for 10 min with uranyl acetate and Reynold’s lead citrate and imaged on a Tecnai 12 transmission electron microscope (FEI) equipped with a Gatan OneView CMOS camera.
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10

High-pressure freeze and cryo-EM of cells

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Cell pellets in cryoprotectant solution were loaded onto membrane carriers (Mager Scientific) and cryo-fixed using the EM PACT2 high-pressure freezer (Leica). Cryo-fixed cells were processed by freeze substitution using an AFS2 automated freeze substitution unit (Leica). Briefly, frozen pellets were incubated at −90°C in a solution of tannic acid in acetone, followed by slowly warming to room temperature in a solution of uranyl acetate and osmium tetroxide in acetone. Samples were infiltrated with Durcupan ACM resin (Sigma-Aldrich), and blocks were polymerized at 60°C. Thin sections (60–90 nm) were cut using the UC7 ultramicrotome (Leica), post-stained with 2% aqueous uranyl acetate and Sato’s lead, and imaged on a Tecnai T12 microscope (FEI) operating at 80 kV. Thicker 250-nm sections were screened on a 200 kV (CM200 Philips) microscope. Samples from all time points were screened in both thin and thick sections. For tomography, serial sections of 250-nm thickness were collected on LUXFilm-coated 2 × 1 mm copper slot grids (Luxel), post-stained, carbon-coated, and overlaid with 10-nm colloidal gold particles (Sigma-Aldrich) for use as fiducial markers. At least 50 sections were screened for morphological determination from two representative resin blocks for each time point and condition.
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