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3 protocols using cd3ε pe cy7

1

Splenocyte Mitochondrial Superoxide Assay

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Freshly isolated live splenocytes were incubated in RPMI supplemented with the following fluorescently tagged antibodies targeting extracellular proteins: CD3ε PE-Cy7, CD19 APC-Cy7 (clone 6D5; BioLegend), CD11b SB-436 (clone M1/70; eBioscience), CD11c APC (clone N418; eBioscience), and NK1.1 SB-600 (clone PK136; eBioscience). Concurrently, 1 μM MitoSOX Red mitochondrial superoxide indicator (Thermo Fisher Scientific) was added, and cells were incubated for 30 minutes at 37 °C. Cells were washed and resuspended in phosphate-buffered saline, and data were acquired using a customized BD LSR II flow cytometer. MitoSOX Red mean fluorescence intensities were normalized to intraexperiment sham-operated control samples. All flow cytometry experiments were conducted with accompanying single-color and fluorescence-minus-one control tubes. Data were analyzed using FlowJo software.
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2

Multiparametric Flow Cytometry of BAL Cells

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BAL contents were centrifuged at 1500 × g for 10 min, and BAL fluid was removed and stored at −80 °C. BAL cells were suspended in staining media (PBS/5% PBS) containing human gamma globulin and incubated on ice for 30 min. Cells were washed and stained with antibodies that were fluorescently labeled for 30 min on ice. Streptavidin-BV605 was used to probe Mac-3-biotin. The samples which were harvested from AA + Flu and Flu-control mice were additionally stained with PB1-tetramer-PE (kindly provided by Dr. Paul Thomas, St. Jude Children’s Research Hospital). All cells were fixed with 1 × stabilizing fixative (BD Biosciences, San Jose, CA). Data were acquired using LSR Fortessa Cytometer (BD). The list of fluorochromes which were purchased from BD Biosciences which were diluted 1:50 unless indicated otherwise are as follows: (clones are indicated in parentheses) CD8α-FITC (53–6.7), CD19-PerCP/Cy5.5 (1D3), Ly6G-V450 (1A8), CD193 (CCR3)-Alexa Fluor 647 (83103), CD4-Alexa Fluor 700 (RM4–5), CD3ε-PE/Cy7 (145–2C11), CD107b (Mac-3)-Biotin (M3/84, BioLegend, 1:500). Controls included unstained cells, cells stained with single colors and matched isotypes. Data were analyzed using FlowJo v10.3 (Flowjo, LLC, Ashland, OR).
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3

Skin and Lymph Node Immune Cell Profiling

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Single cell suspensions were obtained from uninfected skin and lymph nodes as previously described [13] (link). Intracellular CD207 staining was performed using BD Bioscience Cytofix/Cytoperm kit (BD Biosciences, San Jose, CA). For extracellular staining, antibodies were diluted in staining media (3% Calf Serum, 5mM EDTA, 0.04% Azide) with Fb block. The following antibodies were used for skin: CD45.2 AF488, CD64 PE, TCRβ PE-Dazzle 594, CD3ε PE-Cy7, Gr1 AF 647, MHCII AF 700, CD11b BV421, TCRγδ BV510 (all Biolegend, SanDiego, CA), CD11c PerCPCy5.5 (Tonbo Biosciences, San Diego, CA), CD90.2 BUV395, CD8a BUV737 (both BD Biosciences, San Jose, CA). For lymph node staining we used: CD45.2 AF488, CD64 PE, Gr1 AF 647, MHCII AF 700, CD11b BV421, (all Biolegend, SanDiego, CA), CD11c PerCPCy5.5 (Tonbo Biosciences, San Diego, CA). Sample data was acquired on an LSRFortessa flow cytometer (Becton Dickinson, Franklin Lakes, NJ), and analysed using FlowJo software (TreeStar, Ashland, OR).
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