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7 protocols using p21cip1

1

Western Blot Antibody Dilutions

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For Western blots the following antibodies were used at the indicated dilutions. Actin (Sigma, A2103, 1:1000); AKT (CST, 9272, 1:1000); pAKT-S473 (CST, 9271, 1:1000); ERK1/2 (CST, 9102, 1:1000); pERK1/2-T202/T204 (CST 9101, 1:1000); HA-epitope (Abcam, ab137838, 1:1000); IκBα (CST, 4812, 1:1000); pIκBα-S32/36 (CST, 9246, 1:1000) ); p21Cip1 (Abcam, ab7960, 1:1000); p53 (CST, #2524, 1:1000); pp53-S15 (CST, #9284 P, 1:1000); TRIM52 (clone A4; Santa Cruz Biotechnologies sc-398954, 1:250); anti-rabbit-IgG-HRP (CST, 7074S); anti-mouse IgG-HRP (CST 7076S, 1:4000).
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2

In Vitro Kinase Activity Assay

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The in vitro kinase assay was performed by EnzyChrom Kinase Assay Kit (MEDIBENA Life Science & Diagnostic Solutions, Vienna, Austria) according to manufactures’ instruction. Briefly, set up 75 μl reaction mixture containing recombinant CDK5/p25 (Invitrogen) as kinase, ATP and recombinant p53 (Millipore, Billerica, MA), p27Kip1 (Abcam, Cambridge, MA), p21Cip1 (Abcam, Cambridge, MA), Histione H1 (Santa Cruz, Santa Cruz, CA) and ARHI NTD (OriGene, Rockville, MD) as substrate in the Assay Buffer, respectively. Incubate at room temperature for 20 min. Aliquot 20 μl mixture into 3 separate wells on 96 well plate, add 40 μl working reagent to each assay well. Incubate at room temperature for 10 min and read fluorescence intensity (excitation = 530nm and emission = 590nm). Calculate kinase activity as the formula below.
δFluorescence = (fluorescence intensity of sample well—blank well) and slope is the slope of the ADP standard curve.
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3

Protein Expression Analysis Protocol

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Total protein extracts and western blot analysis were performed as described before [18 (link)]. The primary and secondary antibodies used were: p16INK4a 1:500 (Santa Cruz; sc-1207), p21Cip1 1:1000 (Abcam; ab109520), p-H2AX (Ser139) 1:1000 (Millipore; 05-636), p-p53 (Ser15) 1:1000 (Abcam; ab1431), Hif1a 1:1000 (BD Transduction Laboratories; 610958), α-tubulin 1:5000 (Sigma-Aldrich; T9026), Sox2 1:1000 (Abcam; ab97959), Nanog 1:500 (Santa Cruz; sc293121), cMyc-tag 1:1000 (Origene; TA150014), Oct3/4 1:500 (Santa Cruz; sc-5279), Tfcp2l1 1:1000 (Novus Biologicals; AF5726), goat anti-rabbit IgG (horseradish peroxidase, HRP) 1:5000 (Abcam; ab97051), rabbit anti-mouse IgG (HRP) 1:5000 (Abcam; ab97046) and rabbit anti-goat IgG (HRP) 1:5000 (Abcam; ab97100). See uncropped WB in supplementary material.
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4

Sch Inhibition of LPS-Induced Inflammation

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Chromatographically pure Sch was purchased from Feng-Shan-Jian Medicine Research Co. Ltd. (Kunming, Yunnan, China) (Structure shown in Figure 1), and dissolved in 0.5% dimethyl sulfoxide (DMSO) at a concentration of 0.5 mg/mL before experiment. LPS (Escherichia coli serotype O55:B5), Evans blue (EB) dye, and rhodamine 6G were purchased from Sigma Chemical (St. Louis, MO, United States). Primary antibodies against I-κBα, phospho-I-κBα, NF-κB p65, Erk1/2, phospho-Erk1/2, p38 MAPK, phospho-p38 MAPK, phospho-FoxO1, Akt, phospho-Akt, Keratin, caspase-3, cyclin D1, cyclin B1, p27kip1, phospho-retinoblastoma protein (Rb), GAPDH, and histone H3 were obtained from Cell Signaling Technology (Beverly, MA, United States). Antibodies against Claudin-5, Occludin and ZO-1 were from Invitrogen (Rochford, IL, United States), antibodies against FoxO1, p21cip1, myeloperoxidase (MPO) and von Willebrand factor (vWF) from Abcam (Cambridge, United Kingdom). Antibody against VE-Cadherin from Santa Cruz Biotechnology (Santa Cruz, CA, United States), antibody against TLR4 from Novus Biologicals (Littleton, CO, United States) and antibody against prosurfactant protein C (proSP-C) from EMD Millipore Corporation (Temecula, CA, United States).
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5

Immunohistochemistry of Pancreatic Islets

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The pancreases were excised, fixed overnight in 10% paraformaldehyde and embedded in paraffin. Samples were sectioned at 3 μm and stained with hematoxylin-eosin or incubated with primary antibodies: p21Cip1(ab2961, Abcam, Cambridge, UK), p27Kip1(ab7961, Abcam), p57Kip1(ab75974, Abcam), p53 (NCL-p53-CM5p, Leica Biosystems, Wetzlar, Germany), CHOP (sc-575, Santa Cruz Biotechnology, CA, USA), GFP (sc-8334, Santa Cruz), Ki-67 (#12202, Cell Signaling Technology, MA, USA), insulin (I2018, Sigma) or glucagon (A0565, Dako, CA, USA). The immune complexes were visualized with DAB (Histofine Simple Stain Mouse MAX-PO (R) or Histofine Mouse Stain Kit; Nichirei, Tokyo, Japan). Alexa Fluor 488 goat anti-mouse IgG (Sigma) or Alexa Fluor 546 goat anti-rabbit IgG (Dako) was used as the fluorescent secondary antibody. Dapi-Fluoromount-G™ (Southern Biotech, AL, USA) was used to stain nuclei in the final step. At least 20 islets with > 1000 islet cells were counted per mouse for evaluation of p21, p27, p53, CHOP, GNZ and Ki-67 expression by IHC staining. GNZ protein was stained with anti-GFP antibody. Both positive and negative cells were counted manually using the ImageJ Cell Counter plugin.
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6

Histological Analysis of Liver Tissue

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Terminal liver samples were dissected from the left lateral lobe immediately after killing the animal and subsequently fixed overnight in 4% paraformaldehyde. The liver tissue was then paraffin-embedded and sectioned at a thickness of 3 µm. Sections were stained with H&E (Dako), or DAPI (Invitrogen) co-stained with p21Cip1 (ab188224, Abcam). Slides were scanned by ScanScope AT System (Aperio).
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7

Immunoblotting Antibody Characterization

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Primary antibodies were obtained for N-MYC from Santa Cruz (Dallas, TX). E-cadherin antibodies were from Cell Signaling Technology (Danvers, MA), and p21/Cip1 and PARP primary antibodies were obtained from Abcam (Cambridge, MA). All other reagents were obtained from Sigma (St. Louis, MO).
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