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Lysis buffer

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Lysis buffer is a solution used to disrupt and solubilize cells or tissues for protein extraction and analysis. It contains a combination of detergents, salts, and buffers that help to lyse the cell membrane and release the cellular contents, including proteins, into the solution.

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759 protocols using lysis buffer

1

Expression and Purification of GSK3β

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pGEX-GSK3β (Addgene, Cambridge, MA) was introduced into Escherichia coli BL21(DE3) cells (Stratagene, La Jolla, CA) by transformation and the cells were cultured in 5 ml LB medium at 37°C to the mid-log phase. Protein expression was induced by 1mM isopropyl-1-thio-beta-D-galactopyranoside (IPTG). After culturing for 3 h, cells were pelleted by centrifugation and then suspended in 100 μL of a lysis buffer (Cell Signaling Technology, Beverly, MA). Recombinant GST-GSK3β was purified using Glutathione- Sepharose 4B beads (GE Healthcare Life Sciences. UK). Protein lysates of M14, M14/AZD-3, and LOX-IMVI cell lines were respectively combined with 50 μL pre-cleaned Glutathione- Sepharose 4B beads and the mixture was incubated under shaking for 16 h at 4°C. The incubated beads were washed three times with lysis buffer (Cell Signaling Technology, Beverly, MA). After washing, 2× SDS-PAGE loading buffer was added to the washed beads and proteins were extracted from the beads by boiled for 5 min. Proteins were analyzed by 10% SDS-PAGE and western blot analysis.
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2

Protein Extraction from Fetal Liver and HepG2 Cells

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Tissues from the left lobe of fetal liver at GD120 and GD165 from control and gestational age-matched MNR animals were stored frozen at −80°C. Fetal liver (~0.2 g each) were used for extraction of proteins using lysis buffer (Cell Signaling Technology, Danvers, MA, USA) with Protease Inhibitor Cocktail, Phosphatase Inhibitor Cocktail 2, and Phosphatase Inhibitor Cocktail 3 (Sigma-Aldrich, St. Louis, MO, USA) as described previously26 (link). The homogenized samples were sonicated, centrifuged and the clear supernatant was collected and stored at −80°C.
Protein extraction from HepG2 cells was performed as described previously26 (link). In brief, following treatment, cell media was collected, and cell lysates were prepared using lysis buffer (Cell Signaling Technology, Danvers, MA, USA). Cells were sonicated on ice and the supernatant was collected and stored at −80°C. Cell media and lysate were used for western blotting. Total protein concentration in liver tissue extracts and cell lysates was determined using Bradford assay.
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3

Western Blot Analysis of OC Cells

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Protein lysates were prepared by lysing the OC cell lines in lysis buffer (Cell Signaling Inc, MA, USA) containing 50 mM Tris–HCl (pH 7.4), 350 mM NaCl, 0.25% Nonidet P-40, 1 mM EDTA, 1 mM EGTA, 1 mM dithiothreitol, 1 mM glycerol phosphate, 1 mM sodium orthovanadate, and 30% glycerol with protease inhibitors. Protein was estimated by BCA method, separated on SDS-PAGE and transferred onto PVDF membrane using Trans-Blot Turbo (Bio-Rad, CA, USA). The membranes were blocked with 5% BSA in TBST for 1 hour (50 mM Tris-HCL, pH 8.0, 10 mM NaCl and 0.1% Tween 20) at room temperature followed by incubation with the indicated antibodies at 4 °C overnight. Membranes were washed with TBST and incubated with either mouse or rabbit-800 IR dye and finally scanned under Odyssey Fc Imaging system (Bio-Rad, CA, USA). Experiments were conducted three times.
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4

Protein Extraction from Rat Intestine

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Rat pups intestine tissue samples were isolated and suspended in Allprotect Tissue Reagent (Qiagen Inc., Valencia, CA, USA) or flash frozen in liquid nitrogen before being stored at −80°C. The frozen tissue was sectioned and suspended in lysis buffer (Cell Signaling Tech, Boston, MA, USA) containing 1 mM Phenylmethylsulfonyl fluoride (PMSF). Samples were homogenized for 3 minutes on ice. After centrifugation for 1 minute at 4°C, the supernatents were removed and stored at −80°C. To isolate proteins from cellular monolayers grown on 100 mm plates (5.5 × 106 cells), the media was removed and 1 mL of PBS was added and the cells were scraped and transferred to a microfuge tube. Samples were microfuged at 5,000 rpm at 4°C for 10 minutes and the supernatents were removed. The cell pellets were resuspended in 500 μl of lysis buffer (as above). The mixture was then drawn three times through a 27-gauge needle and gently mixed on a rotating platform for 30 minutes at 4°C followed by centrifugation at 4°C for 15 minutes at 10,000 rpm. The supernatants were removed and stored at −80°C. Before use, the tissue and cellular samples were thawed on ice. A total of 5X Laemmli SDS sample buffer was added and then boiled for 3 minutes. The samples were stored at −20°C until used.
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5

PPARγ Phosphorylation in Adipocytes

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3T3-L1 adipocyte differentiated with the above-mentioned differentiation medium were pretreated with the treatment of compounds for 24 h followed by TNFα (50 ng/mg) for 3 h. Cells were then washed with PBS and lysed with lysis buffer (Cell Signaling Technology, Danvers, MA) containing EDTA (Thermo, IL) and phosphatase inhibitors (Thermo). Aliquots of 20 μg total protein were separated on 7% SDS-PAGE gels (Life Technologies) and transferred to PVDF membranes (Life Technologies). The membranes were probed with primary antibodies followed by the appropriate HRP-conjugated secondary antibodies (goat anti-rabbit IgG and goat anti-mouse IgG, 1:3000; Santa Cruz Biotechnology, CA, USA). Blots were then developed. The primary antibodies were: anti-Ser-273 PPARγ (Bioss Antibodies) or anti-PPARγ antibody (Santa Cruz Biotechnology).
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6

Western Blotting Analysis of C2C12 Cells

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C2C12 cells were washed with ice‐cold PBS and lysed in lysis buffer (Cell Signaling Technology) supplemented with protease inhibitors (Roche, Basel, Switzerland). After centrifugation at 15,000 × g for 15 min, the protein in the supernatant was quantified using the detergent compatible protein assay kit (Bio‐Rad, Hercules, CA, USA). The quantified proteins were denatured, separated by sodium dodecyl sulfate‐polyacrylamide gel electrophoresis on 4–12% gradient gels, and transferred onto a polyvinylidene difluoride membrane using the iBlot 2 Dry Blotting System (Thermo Scientific). Blots were incubated with primary antibodies in 1% BSA overnight at 4°C and then incubated with secondary antibodies in 5% skim milk at room temperature for 2 hr. The membranes were developed using SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Scientific) and visualized on a LAS‐4000 luminescent image analyzer (GE Healthcare Life Sciences, Little Chalfont, UK). Actin and GAPDH were used as loading controls.
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7

Quantifying NF-κB Activation in MSU-Induced Arthritis

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The knee joint samples were collected 15 h after MSU i.a. injection (100 μg/10 μl/joint) and homogenized in 400 μl of lysis buffer with (Cell Signaling, Danvers, MA, United States) followed by centrifugation. The determination of phosphorylated NF-κB p65 subunit (activated) and total levels of NF-κB p65 subunit were performed using ELISA PathScan Kits (Cell Signaling, Danvers, MA, United States) according to the manufacturer’s directions. Absorbance was measured at 450 nm (Multiskan GO, Thermo Scientific) and the results are expressed as IOD ratio (total NF-κB p65/p-NF-κB p65).
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8

Cross-linking of GPR110 in HEK293 cells

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HEK293 cells grown in a 15-cm dish were transfected with human GPR110-HA for 24 h. After removing the medium, cells were washed one time with PBS (pH 7.4) and resuspended in 5 mL of PBS. Cells were stimulated with 10 nM synaptamide or oleoylethanolamine (OEA) control or DMSO vesicle for 10 min followed by incubation with 1 mM DSS (i.e., adding 25 µL of freshly made 200 mM DSS in DMSO, final concentration of DMSO was 0.5%) for 30 min at room temperature (25 °C). The cross-linking reaction was quenched by addition of 150 µL of 1 M Tris-HCl (pH 7.4). The cells were lifted by gently scraping and the cell suspension was transferred to a 15-mL conical tube. Cells were pelleted by centrifugation at 1000 rpm for 10 min at 4 °C, and then lysed in 1.5 mL lysis buffer (Cell Signaling Technology) on ice for 40 min with vortexing at 5-min intervals. Cell debris was removed by centrifugation at 15,000 rcf for 15 min and the supernatants were subjected to immunopurification.
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9

Western Blot Analysis Utilizing WES

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Western blots were performed using WES according to the manufacturer's protocol (ProteinSimple, San Jose, CA, USA) [19 (link)]. Briefly, cells were directly lysed on ice with lysis buffer (Cell Signaling Technology, Danvers, MA, USA), sonicated, and supernatant was collected. Protein concentration was measured with BCA protein assay (Thermo Fisher Scientific, Burlington, MA, USA). Protein samples (2 μg), blocking reagent, wash buffer, primary antibodies, secondary antibodies, and chemiluminescent substrate were prepared and dispensed into the assay plate. Assay plate was then loaded into the instrument, and protein was separated into individual capillaries. Protein separation and detection was performed automatically on the individual capillaries. For the primary antibodies, p-eNOS ser1177 (Cell Signaling Technology, Danvers, MA, USA) and HPRT (Santa Cruz Biotechnology, Santa Cruz, CA, USA) were used with anti-mouse or anti-rabbit secondary antibodies provided by ProteinSimple.
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10

Characterization of Lung Cancer Cell Lines

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Human lung cancer cell lines H3255, and HCC827 were obtained from the Hamon Center Collection (University of Texas Southwestern Medical Center, Dallas, TX, USA) and H358, H1299, and PC9 were purchased from ATCC (Manassas, VA, USA). These cells were cultured in Roswell Park Memorial Institute 1640 medium supplemented with 10% FBS at 37°C in 5% CO2. Cells were lysed with lysis buffer (Cell Signaling Technology) supplemented with 1 mM phenylmethylsulfonyl fluoride. All cell lines were checked for mycoplasma contamination using MycoAlert Mycoplasma Detection Kit purchased from Lonza (Cat. No. LT07-118; Switzerland) and short tandem repeats profiling analysis has been submitted for authentication.
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