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Cleaved parp

Manufactured by Cell Signaling Technology
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Cleaved PARP is an antibody that detects the cleaved form of the Poly (ADP-ribose) Polymerase (PARP) protein. PARP is a key enzyme involved in DNA repair, and its cleavage is a hallmark of apoptosis (programmed cell death).

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928 protocols using cleaved parp

1

Anticancer Compound Stock Preparation

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Hydroxyurea was purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan) and dissolved in distilled water to prepare a 1 M stock solution. Gemcitabine, irinotecan, carboplatin and doxorubicin were purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan) and dissolved in dimethylsulfoxide (DMSO) to prepare 1 mM, 20 mM, 25 mM and 10 mM stock solutions, respectively. Methotrexate was also purchased from Wako and dissolved in 1 M NaOH to prepare a 10 mM stock solution. Sunitinib, 5-fluorouracil, paclitaxel and cisplatin were purchased from Sigma (St. Louis, MO, USA) and dissolved in DMSO to prepare 10 mM, 10 mM, 1 mM and 100 mM stock solutions, respectively. Temozolomide was purchased from LKT Laboratories, Inc. (St. Paul, MN, USA) and dissolved in DMSO to prepare a 50 mM stock solution. Antibodies such as Cleaved Caspase-3 (Asp175, #9661), Cleaved PARP (Asp214, #9541), Merlin (#12888), Vimentin (#5741), phospho-Histone H3 (S10, #9706), Cleaved PARP (Asp214, Fluorescein conjugate, #9547), and GAPDH (#5174) were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA).
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2

Immunoblotting Assay for Protein Expression

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Cells were lysed in radioimmunoprecipitation buffer (Boston Bioproducts) with a cocktail of protease and phosphatase inhibitors (Roche). 12.5 µg of protein was separated by 4–20% SDS-PAGE and transferred to polyvinylidene difluoride membranes by electroblotting. After blocking with 5% nonfat dry milk in TBST (20 mM Tris [pH, 7.5], 150 mM NaCl, 0.1% Tween20), membranes were incubated at 4C overnight with primary antibodies. After washing and incubation with horseradish peroxidase-conjugated secondary antibodies (Cell Signaling Technology), blots were washed, and signals were visualized with an ECL kit (Amersham Bioscience). Primary antibodies: c-Myc, N-Myc, Hexokinase II (HKII), PKM2, LDHA, cleaved-PARP, phospho-AMPK, phospho-Raptor, phospho-mTOR, phospho-S6, phospho-4E-BP1, Cleaved PARP, actin (Cell Signaling); NAMPT (Bethyl Laboratories); Naprt1 (Sigma Aldrich); and Vinculin (Thermo Scientific).
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3

Immunoblotting Assay for Cell Signaling

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Washed the cells twice with ice-cold PBS and then lysed with ice-cold lysis buffer (50 mM HEPES pH 7.4, 150 mM NaCl, 2 mM MgCl2, 5 mM EGTA pH 8.0, 1 mM dithiothreitol, 0.5 % Triton X–100, 10 % glycerol, 1 mM Na3VO4, 1 μM microcystin–LR and protease/phosphatase inhibitor cocktail) for 30 min on ice. The lysates were centrifuged at 12,000 rpm for 5 min at 4 °C. Equivalent samples were resolved by SDS-PAGE and transferred onto PVDF membranes. Membranes were blocked with 5 % non-fat milk in PBS and then probed with indicated primary antibody overnight at 4 °C. In this study, the following antibodies were used: Kras (Millipore), HK2 (Cell signaling technology), Cleaved PARP (human) (Cell signaling technology), Cleaved PARP (mouse) (Cell signaling technology), LC3II (Cell signaling technology), Alpha-tubulin (Santa Cruz Technologies) and all of them were used at 1:1000 dilution. Then, primary antibody was detected with HRP-conjugated anti-mouse or anti-rabbit secondary antibody (GE Healthcare). Western HRP substrate was from Millipore.
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4

Generation and Validation of Phospho-Specific Antibodies

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Rabbit polyclonal phospho-specific antibodies against MARK2 S456, S569, S619, and MST2 S15 were generated and purified by AbMart, Inc. The peptides used for immunizing rabbits were AKVPA-pS-PLPGL (MAR2 S456), RVPVA-pS-PSAHN (MARK2 S569), GVTPA-pS-PSGHS (MARK2 S619), and KLKKL-pS-EDSLT (MST2 S15). The corresponding non-phosphorylated peptides were also used for antibody purification and blocking assays. Anti-MARK2, Cyclin B1, β-actin were purchased from Santa Cruz Biotechnology. Anti-MARK1, MARK3, MARK4, p-MARK T208 (activation loop), HDAC1, HDAC2, HDAC4, HDAC5, HDAC6, HDAC7, p-HDAC4/5/7(S246/S259/S155), p-HDAC4/5/7(S632/S661/S486), cleaved-PARP (human specific), cleaved-PARP (rodent specific), cleaved-caspase 3, Erk1/2, Zyxin, Survivin, p-YAP S127, p-YAP S397, YAP, and p-Aurora-A/B/C were from Cell Signaling Technology. Anti-GST and LATS2 antibodies were from Bethyl Laboratory. Anti-Aurora-A and Flag antibodies were from Sigma. Anti-α-tubulin antibody was from Abcam Inc. All other antibodies used in this study are listed in Table S1.
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5

Signaling Pathways Modulation in Cancer

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Exo2, BFA and Secin H3 were obtained from Selleckchem (Houston, TX). Salirasib and β-actin antibody were purchased from Sigma-Aldrich (St Louis, MO). Antibodies that recognize p-AKT, p-ERK1/2, p-STAT3, p-Src, AKT, ERK1/2, STAT3, Src and cleaved (c)-PARP were purchased from Cell Signaling Technology (Beverly, MA). Ki67 and Arf1 antibodies were purchased from Abcam (Cambridge, MA). Cell proliferation was determined by CellTiter 96® AQueous One Solution Cell Proliferation Assay (MTS) (Promega, Madison, MI) and crystal violet staining. Apoptosis was determined by FITC Annexin V Apoptosis Detection Kit with 7-AAD (BioLegend, San Diego, CA). Western blot, Arf1 activation, and Transwell invasion analyses were carried out as described previously [21 (link), 28 (link)–31 (link)].
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6

Western Blot Analysis of Cell Signaling

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Cellular protein was extracted from cultured cells and fresh xenograft tumor specimens using lysis buffer (CelLytic MT; Sigma-Aldrich) containing a mixture of protease and phosphatase inhibitors (Sigma-Aldrich). A 20 μg-aliquot of protein extract was analyzed by Western blotting for the proteins of interest29 (link). The amount of protein in each sample was monitored by expression of β-actin. The following primary antibodies were used at the dilutions shown against both GSK3 isoforms (GSK3α and GSK3β; 1:1,000; Millipore), GSK3β (1:1,000; BD Biosciences) and GSK3β fractions that are phosphorylated at the serine (S) 9 residue (pGSK3βS9; 1:1,000; Cell Signaling Technology) and the tyrosine (Y) 216 residue (pGSK3βY216; 1:1,000; BD Biosciences); glycogen synthase (GS; 1:1,000; Cell Signaling Technology) and its fraction phosphorylated at the S641 residue (pGSS641; 1:1,000; Cell Signaling Technology); cyclin D1 (1:1,000; MBL); cyclin-dependent kinase (CDK)4 (1:1,000; Abcam), cyclin B1 (1:1,000, Cell Signaling Technology), poly[ADP]-ribose polymerase (PARP; 1:1,000; Cell Signaling Technology), cleaved (c)-PARP (1:1,000; Cell Signaling Technology), and β-actin (1:4,000; Ambion).
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7

Osteosarcoma Cell Lines: Culture and Drug Treatments

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Human osteosarcoma cell lines MG-63, Saos-2 and U-2 OS were purchased from the Cell Bank of Chinese Academy of Medical Science (Shanghai, China) and cultured in McCoy’s 5a medium (Gibco, Los Angeles, CA) containing 10% fetal bovine serum (Gibco) and ampicillin and streptomycin at 37 °C in a humidified atmosphere of 95% air and 5% CO2. All cell lines were used within 20 passages. The antibody against HSP90AA1was obtained from Proteintech. The antibodies against LC3, p62, cleaved PARP, Akt, p-Akt, mTOR, p-mTOR, JNK, p-JNK, p38, p-p38 and actin were obtained from Cell Signaling Technology. Cisplatin, doxorubicin, methotrexate, bafilomycin A1, rapamycin, LY294002 and 3-methyladenine were purchased from Sigma Aldrich (St. Louis, MO, USA).
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8

Autophagy and Apoptosis Pathway Analysis

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BCa cell lines were seeded in six-well plates, and after 24 h of culture, the cells were treated with NA at different dose and time. Western blotting was performed using specific antibodies against, Atg3, Atg5, Atg7, Atg12, beclin 1, LC3A, LC3B (Autophagy antibody sampler kit #4445, Cell Signaling), mTOR (#2972), pmTOR (#2974), p70S6K (#2708), phospho-p70S6K (#9234), BAX (#2772), BCL-2 (#2876), cleaved caspase-3 (#9661), cleaved caspase-9 (#9505), PARP (#9542) and cleaved PARP (#9541) (Cell Signaling), and β-actin (Santa Cruz Biotechnology, Dallas, TX, USA). Protein–antibody complexes were detected with the enhanced chemiluminescence method as described earlier (Suman et al, 2013b (link)).
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9

Immunoblotting Analysis of Protein Quantification

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Proteins were quantified using a modified Bradford protocol (BioRad Laboratories, Hercules, CA, USA) and applied to immunoblotting analysis as described previously (26 (link)). Equal amounts of proteins were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) electrophoresis and transferred to nitrocellulose membrane (Whatman, Clifton, NJ, USA). Membrane was blocked with 3% bovine serum albumin (BSA) TBS-T buffer (20 mM Tris–HCl, pH 8.0, 150 mM NaCl, 0.05% Tween-20), probed with antibodies targeting to FST (Santa Cruz Biotechnology, Santa Cruz, CA, USA), AUF1 (Millipore Corporation, Billerica, MA, USA), GAPDH (Cell Signaling Technology, Beverly, MA, USA), Lamin (Santa Cruz Biotechnology) or cleaved PARP (Cell Signaling Technology), incubated with horseradish-conjugated secondary antibodies, detected with the SuperSignal West Pico chemiluminescence substrate (Thermo Fisher Scientific), and finally exposed to an X-ray film.
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10

Protein Expression Analysis in Cell and Tumor Lysates

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Cell and tumor lysates were prepared in NP-40 lysis buffer with protease inhibitor cocktail or Cell Lysis Buffer (Cell signaling, Danvers, MA, USA) respectively. Analysis of lysates was carried out as previously described [7 (link)]. Primary antibodies used were: γH2AX (Cell Signaling), RAD51 (abcam, Cambridge, MA, USA), Ku80 (Bethyl Laboratories, Montgomery, TX, USA), BRD4 (Cell Signaling), BRD2 (Cell Signaling), vinculin (Santa Cruz Biotech, Dallas, TX, USA), GAPDH (Cell Signaling), β-actin (Cell Signaling), α-Tubulin (Cell Signaling), p21 (Cell Signaling), Cleaved PARP (Cell Signaling). Blots were quantitated using ImageStudio Lite (LI-COR Biosciences, Lincoln, NE, USA).
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