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13 protocols using tryptophan trp

1

Electrochemical Analysis of Biomolecules

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Noradrenalin and delphinidin chloride were purchased from Sigma–Aldrich (St Louis, MO, USA). Silver nitrate, nitric acid, AA, UA, tryptophan (Trp) and other reagents, obtained from Merck (Darmstadt, Germany), were of analytical grade and were used as received. Noradrenalin injection solution (1 mg/mL; from Bio and Pharma Companies, Brussels, Belgium) and vitamin C tablet (500 mg, from Pharma Chemie, Tehran, Iran) were purchased from approved local companies at the drug-store. A phosphate buffer solution (0.10M) was prepared with phosphoric acid, and the pH was adjusted using 2.0M sodium hydroxide solution. All solutions were prepared with double-distilled water. Before the experiments, all solutions tested were deserted by passing highly pure nitrogen (99.99%).
An autolab potentiostate-galvanostate PGSTAT 30 (Eco Chemie, Ultrecht, The Netherlands) equipped with GPES 4.9 software (Eco Chemie), was connected to a conventional three electrode system that was used for electrochemical measurements. A platinum electrode (Azar Electrode Co., Urmia, Iran) and a silver/silver chloride/potassium chloride (Ag/AgCl/KCl; 3.0 mol/L) electrode were the counter and reference electrodes, respectively. All potentials in the framework are in reference to this reference electrode.
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2

Biosorption and Bioaccumulation of Heavy Metals by R. mucilaginosa

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Test asks were inoculated with 100 µL from an 18 h culture (1×10 8 yeast cells/mL). Each ask corresponded to one of the following treatments: 1) Control, YNB medium; 2) YNB medium supplemented with 1% Tryptophan (Trp) (Merck®, Darmstadt, Germany), added 24 h after inoculation; 3) YNB medium supplemented with 1 mM each heavy metal analyzed and 4) YNB medium supplemented with 1% Trp, added 24 h after inoculation and 1 mM each metal. All treatments were incubated at 28°C, and each day a 1 mL aliquot of supernatant was sampled and centrifuged at 13,800 x g for 5 minutes. Then, IAA was determined by using the Salkowski reagent as described from Gordon and Weber (1951) (link). The IAA calibration curve was prepared with pure IAA reagent (JT Baker®, Estado de México, Mexico) as a standard solution.
Determination of Possible Biosorption or Bioaccumulation Heavy Metal Mechanisms of R. mucilaginosa
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3

Quantification of IAA and Indoles in Bacterial Cultures

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IAA and indole-related compounds were determined by the Salkowski colorimetric reaction and GC-MS analysis. Bacterial strains JEP3, JEP8, JEP33, JEC8, JEC9, and JEC11 were inoculated in LB broth supplemented with 1% tryptophan (Trp, Sigma-Aldrich) and incubated at 28 °C for 72 h with shaking at 180 rpm. The supernatant was obtained by centrifugation at 1378.21 g for 15 min. For colorimetric determination, cell-free supernatant (200 µL) was mixed with 800 µL of Salkowski reagent and incubated for 30 min at room temperature in the darkness. Absorbance was determined at 530 nm in a UV–visible spectrophotometer (Evolution TM 201, Thermo Fisher Scientific, Cleveland, OH, USA). The identification of IAA in the bacterial supernatants was determined by GC-MS analysis according to Rolón-Cárdenas, et al. [21 (link)]. Ethyl acetate extract was obtained from the supernatant of each bacterial culture and was analyzed by gas chromatography with electron impact mass spectrometry (GC-EIMS, Agilent Technologies, Palo Alto, CA, USA). Quantification of IAA and indole-related compounds were determined using an IAA (Sigma-Aldrich, USA) calibration curve.
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4

Quantification of Amino Acids and Bioactive Compounds

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l-Glycine (Gly), alanine (Ala), γ-aminobutyric acid (GABA), l-aspartic acid (Asp), l-glutamic acid (Glu), L-methionine (Met), l-phenylalanine (Phe), tyrosine (Tyr), d-serine (d-Ser), homocysteine (Hcy), N-acetylaspartic acid (Naa), and tryptophan (Trp) were purchased from Sigma Aldrich Co., Ltd. (Shanghai, China). Formic acid (purity 99%) was obtained from Roe Scientific Inc. (Newark, DE, USA). All solutions were prepared using LC-MS Ultra High Purity water and LC-MS-grade acetonitrile (Tedia Company Inc., Fairfield, OH, USA). The I.S. (acrylamide-d3) was purchased from Toronto Research Chemicals Inc. (Toronto, ON, Canada).
Galangin with 98.0% purity was purchased from Nanjing Zelang Medical Technology Co., Ltd (Nanjing, China). The stock solution was prepared by dissolving the galangin power in sterile saline (containing 5% polysorbate 80). EGb761 (Folium Ginkgo Extract), used as a positive control to explore the efficacy of galangin, was purchased from Dr. Willmar Schwabe (Karlsruhe, Germany).
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5

HPLC Analysis of Tryptophan Metabolites

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Tryptophan (TRP), L-kynurenine sulfate (KYN), and kynurenic acid (KYNA) were obtained from Sigma-Aldrich, Co. (St. Louis, MO, USA) and used as a standard. HPLC-grade chemicals were purchased from J.T. Baker Chemicals (Aventor Performance Materials Poland S.A., Gliwice, Poland) or Sigma-Aldrich. TRP, KYN, and KYNA were analyzed by high-performance liquid chromatography (HPLC), according to the protocol of Zhao et al. (2010) [56 (link)], with minor modifications. Briefly, each serum sample was added 6% HClO4 and centrifuged at 12,000× g for 30 min at 4 °C. The resulting supernatant was applied to an HPLC system consisting of the Dionex P680 Pump, UltiMate 3000 Autosampler with column compartment, RS Variable Wavelength UltiMate 3000 Detector, and RF 2000 Fluorescence Detector (Dionex, Sunnyvale, CA, USA). An Agilent HC-C18 column (250 × 4.6 mm i.d.; 5-µm particle size) was used. The mobile phase was composed of 20 mM sodium acetate, 5 mM zinc acetate, and 4% acetonitrile; the flow rate was 1.0 mL/min. Detectors were set at wavelengths 250 nm for TRP, 365 nm for KYN, and at excitation wavelength of 348 nm and emission at 398 nm for KYNA determination. Control of the HPLC system and data analysis were performed with the Chromeleon software (DionexTM ChormeleonTM version 7.2.6 (10049), serial number 117836).
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6

Photosensitizer-Loaded Polymeric Nanocarriers

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Water-soluble porphyrins: disodium salt of 3,8-di (1-methoxyethyl) deuteroporphyrin IX (dimegin, DMG, synthesized by G.V. Ponomarev at the Institute of Biological and Medicinal Chemistry, Moscow, Russia) and three sodium salt of chlorin e6 (Ce6, Frontier scientific Inc., Logan, UT, USA), and hydrophobic porphyrins: 5,10,15,20-tetraphenylporphyrin (TPP, synthesized by G.V. Ponomarev at the Institute of Biological and Medicinal Chemistry, Moscow, Russia) and fluorinated tetraphenyl porphyrin-5,10,15,20-tetrakis (pentafluorophenyl) porphyrin (TPPF20, (Sigma-Aldrich, Saint Louis, MO, USA)) were used as photosensitizers. The structures of the photosensitizers are shown in Figure 1.
Poly-N-vinylpyrrolidone (PVP, 4 × 104 M, Sigma-Aldrich, Saint Louis, MO, USA) and a ternary block copolymer of ethylene and propylene oxide, Pluronic F127 (F127, 12.6 × 10−3 M, BASF, Ludwigshafen, Germany), are well-studied and widely used in medicine. Chitosan (CT100) was purchased from Sigma-Aldrich (#448869) with a Mw = (50–190) × 103 Da and a deacetylation degree DA = 75–85% and was used without additional purification (Sigma-Aldrich, Saint Louis, MO, USA). Chitosan was used as a biologically active polysaccharide, while tryptophan (Trp, Sigma-Aldrich, Saint Louis, MO, USA) was utilized as a substrate. The structures of polymers are shown in Figure 2.
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7

Enantiomeric Amino Acid Analysis

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l- and d-enantiomers of methionine (Met), phenylalanine (Phe), and tryptophan (Trp) with ≥98% optical purity were purchased from Sigma-Aldrich Sweden AB (Stockholm, Sweden) and used without further purification. (R)-2-butanol, (S)-2-butanol, a racemic mixture of (R)- and (S)-2-butanol enantiomers, and (S)-1-phenylethanol of 99% purity were obtained from Sigma-Aldrich and used without further purification as target gases. The amino acids were dissolved in a water/methanol/formic acid mixture (49:49:2 v/v/v) at a concentration of 0.04 mM.
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8

Preparing Stock Solutions for Plant Research

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Tryptophan (Trp, Sigma-Aldrich, St. Louis, MO, USA) was dissolved in water to 10 mg/mL as a stock. Auxin (IAA; Sigma-Aldrich, St. Louis, MO, USA): stock concentration of 50 mM in ethanol. 5-(4-chlorophenyl)-4H-1, 2, 4-triazole-3-thiol (yucasin; Sigma–Aldrich, St. Louis, MO, USA): stock concentration of 0.5 M in DMSO.
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9

Chitosan Oligosaccharide Conjugate Synthesis

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Chitosan oligosaccharide lactate 5 kDa (Chit5), activated PEG 5 kDa (N-succinimidyl ester of mono-methoxy poly(ethylene glycol)), ovalbumin, tryptophan (Trp) and 1 M 2,4,6-trinitrobenzenesulfonic acid (TNBS) were purchased from Sigma-Aldrich (St. Louis, MI, USA). Congo red and malachite green were purchased from Reachem, Russia. 1-pyrenebutanoic acid succinimidyl ester was bought from Invitrogen (Molecular Probes, Eugene, OR, USA).
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10

Fluorescent Dye Synthesis and Characterization

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Bovine serum albumin (BSA, min. 98%, from Sigma-Aldrich, St. Louis, MO, USA) and tryptophan (Trp, 98%, from Sigma-Aldrich), tyrosine (Tyr, 98%, from Sigma-Aldrich), phenylalanine (Phe, 98%, from Sigma-Aldrich) and phosphate buffer solution (pH 7.4) were used as received. The methyl o-methoxy p-methylaminobenzoate–I and methyl o-hydroxy p-methylaminobenzoate-II have been synthesized and purified by Gormin [44 (link),45 (link),46 (link)]. The purity of dyes was controlled by thin layer chromatography.
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