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66 protocols using facscanto 1

1

Acridine Orange Cell Viability Assay

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Acridine orange was added to the growth medium to a final concentration of 1 mg/ml for 15 min prior to cell trypsinisation. Cells were washed once in PBS and immediately analysed by flow cytometry (BD FACS Canto-1). Data were analysed using FlowJo.
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2

Cell Proliferation Quantification by EdU

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EdU incorporation assay (Click-iT EdU Kit; Invitrogen) was performed according to the manufacturers’ instructions. Samples were analysed by flow cytometry (BD FACS Canto 1) and data analysed using FlowJo.
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Flow Cytometric Analysis of Dendritic Cells and Monocytes in Tumor Microenvironment

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Mononuclear cells (1 × 106 cells) isolated previously from PB, PF, and tumor tissue were incubated with fluorochrome-labeled monoclonal antibodies (mAbs) against cell-surface markers: anti-BDCA-1 FITC (MACS Miltenyi), anti-CD19 PerCP-Cy5.5 (BD Pharmingen), anti-BDCA-2 FITC (MACS Miltenyi), anti-CD123 PE-Cy7 (Biolegend), anti-CD45 FITC (BD Pharmingen), anti-CD14 PE-Cy7 (BD Pharmingen), anti-PD-L1 APC (Biolegend), and anti-PD-L2 PE (Biolegend) for 20 min at room temperature. Then, the cells were washed twice with PBS, and the percentage of myeloid BDCA-1+CD19 DCs and plasmacytoid BDCA-2+CD123+ DCs, and CD45+CD14+ MO/MA with PD-L1 or PD-L2 expression was analyzed using flow cytometry (FACSCanto I Becton Dickinson, USA). The frequency of mDCs, pDCs, and MO/MA are presented as the percentage of mononuclear cells. For each tube, 100,000 events were acquired and analyzed using FacsDiva software. The expression levels of PD-L1/PD-L2 are presented as the percentage of total respective cell subsets (i.e., myeloid BDCA-1+CD19, plasmacytoid BDCA-2+CD123+ DCs, and CD45+CD14+ MO/MA). The method of identification pDCs with PD-L1/PD-L2 expression is presented in Figure 13.
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4

Cell Fixation and Staining Protocol

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Cells were washed in PBS, prestained with fixable viability dye (eBioscience), fixed in 4% PBS‐buffered formalin, permeabilized using 0.2% Saponin and stained with antibodies in PBS. Flow cytometry was performed by FACSCanto I (Becton Dickinson) and data were analyzed using FlowJo (Tree Star).
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5

Multiparametric Flow Cytometry Analysis

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The collected cells were stained for macrophages, neutrophils, T cells, and eosinophils using the following markers: CD11c (eBioscience, cl. N418), Siglec F (BD Biosciences, cl. E50-2440), Ly6G (eBioscience, clone 1A8), CD11b (eBioscience, cl. M1/70), F4/80 (eBioscience, cl. BM8), CD3 (eBioscience, cl. 145-2C11), CD4 (eBioscience, cl. RM4-5), CD44 (eBioscience, cl. IM7), CD69 (eBioscience, cl. H1.2F3). Absolute cell numbers were determined using AccuCount Particles (Spherotech). Flow cytometry data was collected on FACS Canto I (Becton Dickinson) and analyzed with FlowJo (Treestar, Inc).
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6

Standardized Bead-Based Flow Cytometry

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NIST-traceable beads, Table 1, were serially diluted in Dulbecco’s phosphate-buffered saline (DPBS) until a concentration minimising coincidence detection with a stable fluorescent intensity was determined. Beads were analysed at the lowest flow rate obtainable on each instrument and a minimum of 5,000 events were recorded. Flow cytometer voltages were adjusted so that beads with the maximum and minimum scattering were within the dynamic range of the side scattering collection (SSC) detector. Thresholds were set on SSC on all instruments and were placed so that they were below the 203 nm and 490 nm bead populations. Instruments used were LSR Fortessa, FACS Canto I, and Special Order LSR Fortessa X-20 (all by Becton Dickinson, Oxford, UK). All flow cytometers used an optical bandpass filter centered at 488 nm wavelength with a bandwidth of 10 nm (488/10 filter).
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7

Flow Cytometric Analysis of IL-12 in PBMCs

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2.5 × 105 PBMCs were seeded in 96-well plates with RPMI 1640 (Gibco Cat # 11875119) supplemented with 10% FBS and 1% PS (Sigma Aldrich) and incubated with monensin (Golgistop; BD Biosciences Cat # 554715) for 5 h. After that, PBMCs were stained with anti-CD11b APC/Cy7 (BioLegend Cat # 10,225, RRID: AB_830641) anti-CD14-PerCP (BioLegend Cat # 325631, RRID: AB_2563327), anti-CD16-FITC (BioLegend Cat # 302005, RRID: AB_314205). Live cells were distinguished using Fixable Viability Dye eFluor™ 450 (eBioscience Cat # 65-0863-14). After staining of surface markers, cells were fixed and made permeable according to the manufacturer's instructions BD Cytofix/Cytoperm Kit (BD Bioscience Cat # 554715). Then, the cells were stained with anti-human IL-12-biotin (ThermoFisher Cat # AHC7129, RRID: AB_2536290) plus PE-conjugated Streptavidin (BioLegend Cat #405203), and acquired using a FACS Canto I (Becton Dickinson). All analysis was carried out with FlowJo software (Tree Star).
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8

Isolation and Characterization of Wharton's Jelly Mesenchymal Stem Cells

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Wharton's Jelly human Mesenchymal Stem Cells (WJ-hMSCs) were isolated from umbilical cords from full-term deliveries, which were collected at the Gynaecology Unit of the Azienda Ospedaliera Universitaria-Pisa Hospital. Wharton's jelly (WJ) was separated from the cord vessels and placed in 6-well dishes containing alpha-minimum essential medium (α-MEM; GIBCO) supplemented with 20% fetal bovine serum (FBS; Euroclone, Italy) and incubated at 37°C with 5% humidified CO2. Fresh medium was added twice a week up to 90% confluence. MSCs were then harvested with 0.25% trypsin and 1 mM EDTA solution (Cambrex, Italy) and re-plated at 8.000 cells/cm2. Successive passages were performed in DMEM medium supplemented with 10% fetal bovine serum (FBS), 2 mM L-glutamine, 10 U/ml penicillin and 10 mg/ml streptomycin. The expanded cells were characterized after the primoculture (P0) by flow cytometric analysis (FACS Canto I, Becton Dickinson CA, USA) of specific surface antigens (CD14−, CD34−, CD20−, CD45−, CD73+, CD90+ and CD105+) according to the mesenchymal immunophenotype. Cells were used within the 8th passage. In order to perform single-cell experiments, WJ-hMSCs were seeded at the final concentration of 30 × 104 cells/cm2 and kept in humidified atmosphere until experiment time.
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9

Flow Cytometric Analysis of Immune Cells

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The samples were run in an external FACS core facility from the National System of Flow Cytometry, Argentina (FACS Canto I, Becton Dickinson). Data were analyzed using Flowjo software (Tree Star Inc).
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10

Intracellular pH Measurement in DRG Cells

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After in vivo treatment and dissociation, DRG cells were incubated with 1 μM BCECF (Life Technologies, Italy) in Krebs–Ringer buffer (KRB, 135 mM NaCl, 5 mM KCl, 0.4 mM KH2PO4, 1 mM MgSO4, 5.5 mM glucose, 20 mM HEPES, pH 7.4) containing 2 mM CaCl2 (15 min, room temperature). Cells were washed, re-suspended in KRB (pH 7.4) and used for flow cytometry (FACSCanto I, Becton Dickinson,). Excitation was performed at 488 nm, using an air-cooled, 20-mW solid-state laser, the emission fluorescence was collected and the FITC and PE median fluorescence values and CV were determined using FACS Diva software. Approximately 10,000 cells were collected in a user-defined gate. A calibration curve was then prepared by suspending cells in high [K+] buffers (pH 5.5-6.5-7.5) containing 20 µM of the proton ionophore nigericin (Intracellular pH Calibration Buffer Kit, Life Technologies). Finally, intracellular pH was calculated by comparing FITC/PE nm emission fluorescence ratios with the values obtained by the calibration curve.
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