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477 protocols using phospho p38

1

Western Blot Analysis of Autophagy and Mitochondrial Proteins

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Protein extraction of SMG tissues and SMG‐C6 cells and western blot analysis were performed as previously described (Xiang et al., 2014). The antibodies used were as follows: microtubule‐associated protein1 light chain 3 (LC3), Beclin‐1, SQSTM1/p62, peroxisome proliferator‐activated receptor γ coactivator‐1α (PGC‐1α), nuclear respiratory factor‐1 (NRF‐1), PTEN induced putative kinase 1 (PINK1), Parkin, extracellular regulated protein kinases1/2 (ERK1/2), phospho‐ERK1/2, c‐Jun NH2‐terminal kinase (JNK), phospho‐JNK, p38, phospho‐p38 (all 1:1,000; Cell Signal Technology), and β‐actin (1:4,000; Abcam)
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2

Protein Extraction and Western Blotting

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Cells were lysed on ice for 30 min with RIPA lysis buffer, which contains 50 mM Tris_HCl, pH 7.4, 150 mM NaCl, 1% Nonidet P-40, and 0.1% SDS supplemented with protease inhibitors (10 mg/ml leupeptin, 10 mg/ml pepstatin A, and 10 mg/ml aprotinin). For western blotting, 25 μg of protein sample was resolved on 12.5% SDS-PAGE and electrotransferred onto nitrocellulose membranes (Whatman). The primary antibodies used were as follows: phospho-Akt, total Akt, phospo-p44/p42 ERK, total p44/p42 ERK, phospho-p38, total-p38, phospo-JNK, and total-JNK were purchased from Cell Signaling Technology (1:1000 dilution ratio). Anti-NFATC1 antibody was purchased from Santa Cruz (1:500 dilution ratio). β-actin or GAPDH was used as loading control. Horseradish peroxidase-conjugated secondary antibodies were used at a 1:5000 dilution. The antigen–antibody complexes were visualized using the enhanced chemiluminescence detection system (Millipore) following the manufacturer’s instructions. Immunoreactive bands were quantitatively analyzed in triplicate by normalizing the band intensities to their respective controls on scanned films using ImageJ software.
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3

Cell Proliferation and Apoptosis Assay

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A cell counting kit (CCK) for WST assay was purchased from Donginbiotech Co. (Seoul, Korea). Crystal violet solution was purchased from Sigma-Aldrich (St Louis, MO, USA). Anti-phospho-AMPK, phospho-p38, phospho-ERK, phospho-JNK, cyclin D1, CDK4, AMPK, PARP, caspase-3, Bcl-2, Bcl-xL, and Bax antibodies were purchased from Cell Signaling (Danvers, MA, USA). Anti-p38, ERK, JNK, GAPDH, and α-tubulin antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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4

Recombinant Human IL-26 Protein Analysis

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Recombinant human IL-26 protein (MBS1362134) was purchased from MyBiosource (San Diego, CA, USA). Palmitate (P0500), metformin (D150959), methylthiazolyldiphenyl-tetrazolium bromide (MTT) (M5655), and bovine serum albumin (BSA) (A7030) were purchased from Sigma-Aldrich Corporation (St. Louis, MO, USA). Antibodies against cyclooxygenase-2 (COX-2; 1:1000; 35-8200) were obtained from Thermo Fisher Scientific (Waltham, MA, USA), while those against collagen type II (COL-II; 1:1000; ab34712) and matrix metalloproteinase-1 (MMP-1) (1:1000; ab134184) were purchased from Abcam (Cambridge, MA, USA), and those against IL-6 (1:1000; #12153), Erk1/2 (1:1000; #4695), phospho-Erk1/2 (1:1000; #9101), phospho-c-Jun (1:1000, #3270), phospho-p38 (1:1000, #9211), phospho-JNK (1:1000, #9251), STAT1 (1:1000, #14994), phospho-STAT1 (1:1000, #9131), STAT3 (1:1000, #9139), phospho-STAT3 (1:1000, #9131), histone H3 (1:2000, #9715), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH; 1:2000; #5174) were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA).
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5

Dexamethasone and CNP-22 Regulate MAPK Signaling

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ATDC5 cells were plated in 6-well tissue culture plates and differentiated for 14 days as described above. Differentiated ATDC5 cells were incubated in insulin-free medium for 2 days. Then after the incubation with vehicle or 10−6 M DEX51 (link) for 30 minutes, vehicle or 10−6 M CNP-2220 (link) was added into the medium for 30 minutes. Total protein was extracted from ATDC5 cells by RIPA buffer containing SDS solution and a protease inhibitor cocktail (No. 08714-04, Nacalai), which was supplemented with phosphatase inhibitors (No. 07574-61, Nacalai). Western blotting was performed using the following primary antibodies: Erk 1/2 (No. 4695S, Cell Signaling Technology), Phospho-Erk 1/2 (No. 4376S, Cell Signaling Technology), p38 (No. 9212S, Cell Signaling Technology), Phospho-p38 (No. 9211S, Cell Signaling Technology; RRID), GSK3β (No.9315S, Cell Signaling Technology), and Phospho-GSK3β (No. 9323 S, Cell Signaling Technology).
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6

Cytotoxicity Assay and Cell Signaling Analysis

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Roswell Park Memorial Institute (RPMI) 1640 Medium, Dulbecco's Modified Eagle's Medium (DMEM), penicillin/streptomycin, amphotericin B, and Trypsin-EDTA were purchased from Welgene (Seoul, Republic of Korea). Fetal bovine serum (FBS) was purchased from J R Scientific (Woodland, CA, USA). CuD was purchased from Extrasynthese (Genay, France). 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), propidium iodide (PI), 7-aminoactinomycin D (7-AAD), 2′,7′-dichlorofluorescein diacetate (DCF-DA), and N-acetyl-L-cysteine (NAC), SP600125 and SB203580, were purchased from Sigma-Aldrich (St. Louis, MO, USA). Annexin V was purchased from BD Biosciences (Franklin Lakes, NJ, USA). Primary antibodies against phospho-cdc2, phospho-25c, p21, cleaved caspase-7 and -8, cleaved PARP, JNK, c-jun, phospho-c-jun, p38, phospho-p38, and GAPDH were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibodies against cyclin B1, cdc2, cdc25c, and phospho-JNK were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). The secondary antibody, horse antimouse immunoglobulin G (IgG)-horseradish peroxidase (HRP) and goat antirabbit IgG-HRP were purchased from Cell Signaling Technology.
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7

Skullcapflavone II Modulates Signaling Pathways

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Skullcapflavone II (5-hydroxy-2-[2-hydroxy-6-methoxyphenyl]-6,7,8-trimethoxychromen-4-one) was purchased from ChemFaces (Wuhan, Hubei, China). Antibodies against phospho-ERK, ERK2, p38, and NF-κB p65 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against phospho-NF-κB p65 (Ser536), phospho-JNK, JNK, phospho-p38, phospho-c-Jun, and c-Jun were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-phospho-tyrosine antibody (clone 4G10) was purchased from Millipore (Billerica, MA, USA). Anti-collagen type I cleavage-site antibody was purchased from ImmunoGlobe (Himmelstadt, Germany). Anti-GAPDH antibody was purchased from AbClone (Seoul, Korea). Horseradish peroxidase-conjugated goat anti-mouse IgG and rabbit IgG were obtained from KOMA Biotech (Seoul, Korea). Anti-MMP-1 and pro-collagen α1(I) N-propeptide (pN-ColIα1) antibodies were a gift from Dr. Chung, J. H. (Seoul National University College of Medicine, Republic of Korea) [53 (link)]. Alexa Fluor® 488 goat anti-rabbit IgG (H+L) and rhodamine-conjugated phalloidin were purchased from Thermo Fisher Scientific (Waltham, MA, USA).
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8

Quantitative Western Blot Analysis of Phospho-p38 in C. elegans

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Protein levels were measured by Western blotting in whole worm lysates obtained from 8 to 9 independent biological replicates. Briefly, whole worm lysates obtained from approximately 1,000 animals on day 1 of adulthood were subjected to SDS–PAGE in polyacrylamide gels (4%‐12%), immunoblotted with specific antibodies against phospho‐p38 (Cell Signaling) or total PMK‐1/p38 (Inoue et al, 2005 (link)), and visualized following standard procedures. Quantification analysis of all blots was performed with the use of ImageJ software. Results were corrected to Ponceau red staining (0.5%, w:v). See Appendix for complete images of Western blots.
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9

Cell Signaling Pathway Regulation by Silymarin

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Silymarin with a purity of 99% was obtained from Sigma (St Louis, MO, USA) and was dissolved in dimethylsulfoxide (DMSO) ( Sigma, St Louis, MO, USA) to make a stock solution. It was diluted with DMEM with the DMSO concentration kept below 0.1% in cell culture, which had no detectable effects on cells. U0126 and SB203580 were purchased from Cell Signaling Technology (Danvers, MA, USA) and Selleck Chemicals (Houston, TX, USA), respectively. Primary antibodies against LC3B, phospho-ERK, phospho-p38, β-actin and horseradish peroxidase-conjugated second antibodies were all pruchased from Cell Signaling Technology. The SuperSignal West Pico Chemiluminescent Substrate for horseradish peroxidase enzyme was obtained from Pierce (Rockford, IL, USA).
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10

Western Blot Analysis of Drosophila Protein

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For western blotting, total protein from 20 heads of 3-day-old flies was isolated from each indicated group and subjected to SDS-gel electrophoresis. Following transfer, membranes were probed with antibodies to Aβ42 (BioLegend, San Diego, CA, USA), actin (Developmental Studies Hybridoma Bank, Iowa city, IA, USA), GSK-3β (Santa Cruz Biotechnology, Dallas, TX, USA), phospho-Drosophila AKT (Ser505), AKT, phospho-GSK-3α/β (Ser21/9), phospho-Dp70S6K (Thr398), phospho-p38 (Thr180/Tyr182), phospho-ERK (Thr202/Tyr204), ERK, phospho-SAPK/JNK (Thr183/Tyr185) or JNK (Cell Signaling Technology, Beverly, MA, USA). Western blot analyses were conducted using standard procedures with horseradish peroxidase-conjugated secondary antibodies.
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