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Vibramax 100

Manufactured by Heidolph
Sourced in Germany

The Vibramax 100 is a laboratory stirrer designed for gentle mixing and suspension of samples. It provides a consistent and uniform orbital motion to ensure thorough mixing of liquids and powders.

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17 protocols using vibramax 100

1

Extraction and Concentration of Berry Samples

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Sample matrices were prepared from store-bought raspberries, blueberries, and strawberries as follows. About 30 g of berries was weighed into plastic boxes to which 200 ml of 0.1 or 1% AlconoxTM (Alconox, Inc., NY, United States) was added. The boxes were then placed on an automatic shaker (Heidolph Vibramax 100); raspberry samples were shaken at 300 rpm for 10 min, whereas blueberry and strawberry samples were shaken at 600 rpm for 10 min.
The eluate was then transferred into four 50 ml tubes for concentration by centrifugation at 1,690 rcf for 10 min and the supernatant removed by vacuum suction, leaving 10 ml of the sediment. The pooled sediment was centrifuged at 3,803 rcf for 10 min with a deceleration break set to 6 (on a scale of 0–9) and about 1.5 ml of the sediment was further concentrated down to 250 μl by centrifugation at 13,000 rcf for 5 min.
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2

Lichen Cell Membrane Integrity Analysis

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After treatment with solutions, the thalli were gently rinsed in deionized water to remove unbounded ions (Yemets et al. 2015 (link)). Ca 100 mg of air-dried lichen material was weighed and intended for analysis. The initial electrical conductivity in μS cm−1 (Ci) of the distilled water was measured using a pH/conductivity meter (Seven Go Duo SG23-FK5, Mettler Toledo). The samples were placed in 50 ml of distilled water in glass weight bottles, sealed with glass stoppers, and shaken on a vibrating shaker for 1 h (Vibramax 100, Heidolph). The conductivity of the samples was measured after soaking the thalli (Cv). The thalli were then boiled for 10 min at 100 °C to disrupt the cell membranes. The conductivity after the samples had cooled down to 20 °C was measured again (Cf). Relative electrical conductivity (EC), indicating the loss of cell membrane integrity, was calculated according to the formula: ((CvCi)/Cf) × 100 (%). Five replicates for each experimental group were included. See Osyczka and Rola (2019 (link)) for details on the measurement procedure.
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3

Quantifying Phytic Acid in Cucumber Extracts

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Fifty milligrams of ground cucumber samples were extracted with 1.5 mL of 0.4 M HCl for 3.5 h on the platform shaker at 600 rotations per minute (Heidolph Vibramax 100, Schwabach, Germany). Then, the extracts were centrifuged at 13,000× g for 30 min and filtered using syringe filters (nylon membrane, pore size 0.45 μm).
The phytic acid content in the extracts was determined by the method of Haug and Lantzsh [61 (link)] with minor modifications. Up to 0.5 mL of extract and 1 mL of ferric (III) solution (ammonium iron (III) sulphate · 12 H2O in 2 M HCl) were added. The mixture was heated (100 °C) for 30 min in a dry heating block (myBlock Mini Dry Bath; Benchmark, Sayreville, NJ, USA). After cooling at 4 °C for 30 min to precipitate the iron–phytic acid complex, the samples were centrifuged for 30 min at 13,000 rpm, and the supernatant was collected. Then, 750 µL of 2,2′-bipyridine solution (1% 2,2′-bipyridine and 1% thioglycolic acid in water) was added to 500 µL of the supernatant. The absorbance was measured at 519 nm against distilled water. The phytic acid concentration was calculated based on the calibration curve (y = −0.0036x + 0.9983, R2 = 0.9986) using sodium phytate as a reference. The amount of phytate in the tested sample was expressed as mg of phytate per gram of dry mass (mg g−1 DW).
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4

Bacterial Culture Preparation Protocols

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The strains of E. coli STCC 4201, Salmonella Typhimurium STCC 878, L. monocytogenes STCC 5672, and S. aureus STCC 4465 were obtained from the Spanish Type Culture Collection (STCC). The bacterial cultures were maintained frozen at –80°C in cryovials. A broth subculture was prepared by inoculating 10 mL of tryptone soy broth (Biolife, Milan, Italy) supplemented with 0.6% (w/v) yeast extract (Biolife) (TSBYE) with a loopful of growth from tryptone soy agar (Biolife) supplemented with 0.6% (w/v) yeast extract (TSAYE). The subculture was incubated at 35°C for 6–12 h in a shaking incubator (150 rpm; Heidolph Instruments, Vibramax 100, Schwabach, Germany). With these subcultures, 250 mL flasks containing 50 mL of TSBYE were inoculated to reach a concentration of 104 CFU/mL and then incubated for 24 h under the same conditions until the stationary growth phase was reached (2 × 109 CFU/mL).
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5

Monocyte Adhesion Assay on Fibronectin

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SCR or TG2-KD THP-1 monocytes were treated with 50 ng/ml IL-4. After 24 h treatment, cells were centrifuged and resuspended in adhesion medium (RPMI 1640 medium + 0.5% bovine serum albumin +25 mM HEPES). 5 × 104 of the treated cells were then added to a 96-well plate coated with 2 μg/cm2 bovine FN (Sigma-Aldrich). Cells were allowed to adhere to the FN layer at 37° on an orbital shaker (Vibramax 100, Heidolph, Germany) at 300 rpm. After 1 h, the non-adherent cells were removed and the adherent cells were labeled with 0.5 μM calcein (Invitrogen) in the adhesion medium for 10 min at 37°. Then, excess of calcein was removed and cells were washed four times with PBS and lysed in 0.1 M NaOH. The fluorescence (emission 485 nm; extinction 520 nm) was then measured using a spectrophotometer (Fluostar Galaxy Microplate Reader, BMG Lab Technologies, Germany) and using FluoStar Software (BMG Lab Technologies).
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6

Biphasic Hydrogel Release of Growth Factors

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Growth factor loaded PMBs were used to prepare biphasic systems. Controls were prepared using hydrogels loaded with growth factors without PMBs and PMBs loaded with growth factors without Si-HPMC hydrogels. Crosslinking was allowed for 3 h at 37 °C and 1 mL of PBS/BSA 1% (v/w) was added on the top of samples. Plates were then incubated at 37 °C on a vibrating platform shakers (Vibramax 100 - Heidolph Instruments GmbH&Co., Schwabach, Germany) for 28 days. At selected times, supernatants were collected, replaced by fresh PBS/BSA 1% (v/w) and kept at −80 °C for further experiments. Determination of growth factors concentrations in supernatants were performed using ELISA Duoset® assay kits (RnDSystems - DY240 and DY583 for TGF-β1 and GDF-5, respectively).
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7

Yeast Culture Growth and Analysis

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Experiments were performed with the diploid S. cerevisiae strain BY4743 (EUROSCARF, [9] (link)). Standard Yeast Extract Peptone Dextrose medium (YEPDYEPDYeast Extract Peptone Dextrose medium) was used for all cultures. For a short growing time, a 16 h culture was used to inoculate the medium to give an . Aliquots of 10 ml of this inoculated medium were distributed into a series of double-cap 13 ml tubes tightly fixed on a Vibramax 100 (Heidolph, Schwabach) 3 mm-vibration orbital shaker platform set at 450 rpm and incubated at 28°C. One tube was used at each time point, for OD measurement, and cytometric analysis.
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8

Octanol-Water Partition Coefficient

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Octanol-saturated water (OSW) and water-saturated octanol (WSO) were prepared from octanol and 0.2 M KI solution in distilled water (overnight shaking; Vibramax 100, Heidolph Instruments). Complexes 4 and 6 (1 mmol) were ultrasonicated for 15 min in 10 mL of OSW, centrifuged and supernatants were collected. Aliquots (5 mL) of the obtained OSW solutions of complexes 4 and 6 were added to WSO (5 mL) and shaken for 2 h at ambient temperature. After that, the mixtures were centrifuged and aqueous layer was separated carefully. The platinum concentration was determined from OSW aliquots taken before ([Pt]OSWb) and after ([Pt]OSWa) partition by ICP-MS (ICP-MS spectrometer 7700x, Agilent) with the obtained values corrected for the adsorption effects. logP = log([Pt]WSO/[Pt]OSWa) equation was used for the partition coefficients calculation; [Pt]WSO = [Pt]OSWb−[Pt]OSWa. The experiments were conducted in triplicate.
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9

Lipophilic Ethacridine Complexes via Ion Pairing

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Lipophilic complexes of ethacridine were prepared via hydrophobic
ion pairing as previously described by our research group.17 (link) Ethacridine was dissolved in 0.01 M HCl at a
concentration of 5 mg/mL. Investigated surfactants—classified
as phosphates, sulfates, and sulfonates (Table 1)—were dissolved in water at concentrations
providing a molar ratio of 1:1. Thereafter, 100 μL of each surfactant
solution was added to equal amounts of ethacridine. The immediate
appearance of a yellow precipitate indicated HIP formation. After
incubation for 30 min at 25 °C and 600 rpm (Vibramax 100, Heidolph
Instruments, Germany), HIPs were separated by centrifugation for 15
min at 13,400 rpm (Eppendorf Minispin, Germany). Fluorescence intensity
(FI) was measured as described above and precipitation efficiency
was calculated using eq 1 The resulting HIPs were washed twice with
water, dried under vacuum (UniVapo 100 ECH, UniEquip, Germany), and
stored at −20 °C until further use.
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10

Biodegradable Biliary Stent Degradation Study

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The research samples were biliary biodegradable stents (Figure 1a) manufactured by ELLA-CS (Hradec Králové, Czech Republic). These stents were braided from 0.39 mm thick monofilament made of poly(p-dioxanone) with added 1-hydroxy-4-(p-tolylamino)anthracene-9,10-dione (also referred to as Solvent Violet 13, content < 0.1 wt%). The stent length is 80 mm and its diameter is 8 mm. The mass of an intact stent is 0.32 g.
A total of 32 stents were analyzed, and degradation periods of 0, 3, 6, and 9 weeks were chosen. 8 stents were incubated for each of these periods. Accordingly, we refer to stents after these degradation periods as test groups 0W (before degradation), 3W (degraded for 3 weeks), 6W (degraded for 6 weeks), and 9W (degraded for 9 weeks). Each stent was incubated separately in a sealed tube filled with PBS. The tubes were shaken all the time in a circular vibrating shaker Vibramax 100 (Heidolph, Schwabach, Germany) placed in a thermostatic cabinet Liebherr FK 3640 (Liebherr Haushaltsgeräte, Ochsenhausen, Germany) at a constant temperature of 37 °C. Each stent was cut with scissors into smaller samples (four 70 mm long pieces, three 20 mm long pieces—Figure 1b) under aseptic conditions in a safety cabinet Safemate EVO 1.2 (BioAir, Camden, NJ, USA) after its degradation period.
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