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Phenyl sepharose

Manufactured by GE Healthcare
Sourced in United States

Phenyl-Sepharose is a chromatography media used for the purification and separation of proteins. It is composed of agarose beads with covalently attached phenyl groups, which interact with hydrophobic regions of proteins. Phenyl-Sepharose is commonly used in the initial stages of protein purification to capture target proteins from complex mixtures.

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11 protocols using phenyl sepharose

1

Conjugation of FGF1V to MMAE

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FGF1V solution (30 µM) in 25 mM phosphate buffer, pH 7.4, and 100 mM NaCl was reduced with 1 mM TCEP for 20 minutes at room temperature, desalted with a Zeba spin column (Thermo Fisher Scientific, Waltham, MA, USA), and added to a CH3CN solution of linker-functionalized MMAE (vcMMAE) containing a maleimide moiety, and the conjugation was carried out at 4°C. There was a two- to fivefold molar excess of the drug over the FGF1V N-terminal –SH group. The reaction was quenched after 16 hours with an excess of free cysteine. Different reaction conditions and durations were tested in order to achieve optimum conjugation efficiency with protein structure and function retained. Reaction progress was monitored by SDS-PAGE and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS).
To purify the conjugate, unmodified FGF1V was removed by hydrophobic interaction chromatography on phenyl-Sepharose (GE Healthcare, Chicago, IL, USA). The conjugation reaction mixture was loaded on a phenyl-Sepharose column equilibrated in 25 mM Tris-HCl, pH 7.4, and 2 M NaCl, and FGF1V–vcMMAE was eluted with a linear gradient of decreasing salt concentration (from 0% to 100% of 25 mM Tris-HCl, pH 7.4, 0.1 M NaCl). Identity and purity of conjugated FGF1V–vcMMAE were confirmed by SDS-PAGE, Western blotting, and MALDI-TOF MS.
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2

Purification of Acidovorax sp. Extracellular Proteins

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The Acidovorax sp. 210-6 culture (2 liters) grown on DEHP was centrifuged at 10,000 × g for 15 min to pellet down the bacterial cells, cell debris, and residual DEHP. Extracellular proteins (10 μg/ml; totally, 700 ml) were filtered through a 0.22-μm nitrocellulose membrane (47-mm diameter; Millipore) and concentrated using the Amicon Ultra centrifugal filters to 7 ml (cutoff, 30 kDa). The resulting proteins were purified using the AKTA start purification system through DEAE Sepharose Fast Flow packed in the XK16 column (GE Healthcare, USA), followed by another purification using phenyl Sepharose (GE Healthcare, USA).
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3

Recombinant sAPPα Production in Pichia

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Recombinant human sAPP695α was expressed in the methylotrophic yeast Pichia pastoris strain GS115 and purified from culture media by FPLC (BioRad) as previously described [26] (link). Chromatographic purification was by anion exchange using Q Sepharose (1.6×25 cm column, GE Healthcare) followed by hydrophobic exchange with phenyl Sepharose (1.6×25 cm column, GE Healthcare). APP eluted in phenyl Sepharose buffer B (50 mM Na2HPO4, pH 7) was then concentrated using Amicon Ultra-15 Centrifugal Filter Units (30 kDa, Merck Millipore, Australia) and stored at –80°C as 20 µM stocks. Elimination of anionic buffer in original sAPPα, APP, CP and BSA stocks was carried out by buffer-exchange with 50 mM HEPES, 150 mM NaCl, pH 7.2 (HBS) using a Superdex 200 10/GL filtration column (GE Healthcare).
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4

Insulin Purification via Ammonium Sulfate

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Ammonium sulfate was added to the supernatant containing the active insulin to a final concentration of 500 mM. Then, the solution was passed through a 0.22 μm filter (Biofil), and subjected to phenyl sepharose (GE Healthcare) column (1 × 20 cm, Pharmacia) at about 20 mg per mL resin. The column was connected to a Pharmacia liquid chromatography system, pre-equilibrated with 20 mM Tris-HCl, 500 mM ammonium sulfate at pH 8.0. The equilibration buffer was also used to wash the bound materials. Then, insulin was eluted with a descending linear gradient of ammonium sulfate (500–0 mM) in 20 mM Tris-HCl, pH 8.0. The experiment was done at flowrate of 1 mL/min with a fraction size of 2 mL and the eluates were analyzed by measuring the optical density at 276 nm. In the elution profile, the position of native insulin was identified by the addition of an authentic sample (standard human insulin). The elution with the same condition was considered for the natively folded insulin. The fractions corresponding to the native insulin were collected and dialyzed extensively against acetic acid (1 M) at 4°C [31 (link), 32 ].
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5

Chromatographic Resin Preparation and Assays

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Chromatographic resins Phenyl Sepharose, Butyl Sepharose and CNBr-activated Sepharose 4B were from GE Lifesciences (Marlborough, MA, USA); Butyl Toyopearl was from Tosoh Bioscience (Griesheim, Germany). The SDS-PAGE molecular weight standards and bicinchoninic acid (BCA) protein assay kit were from Thermo Fisher Scientific (Rockford, IL, USA). Other reagents were obtained from Sigma-Aldrich (St. Louis, MO, USA), Merck (Darmstadt, Germany), Fluka (Buchs, Switzerland), PanReac AppliChem ITW Reagents (Darmstadt, Germany), Serva (Heidelberg, Germany) and Amresco (Solon, OH, USA) and were at least analytical grade. All buffers and other solutions were prepared using ultrapure water.
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6

Purification of Folate Metabolism Enzymes

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Ingredients for bacterial growth and chemicals used in protein purification were purchased from Sigma–Aldrich. Chromatography media (CM-Sepharose and Phenyl-Sepharose) were from GE Healthcare. (6S)-5-CHO-H4PteGlu (leucovorin) was a gift from Merck & Co., Schaffhausen, Switzerland. All other reagents were from Sigma–Aldrich. Lometrexol was purchased from Sigma–Aldrich. Nolatrexed, raltitrexed, and methotrexate were purchased from Ambinter (Paris, France). All chemicals were of the highest purity available.
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7

Recombinant Human APP Isoforms Expression and Purification

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The recombinant fragments of the human soluble APP695α, APP751α and APP770α were all expressed in the methylotrophic yeast Pichia pastoris strain GS115 and purified as previously described [89 (link)]. Media containing APP required a two-step purification procedure using an AKTA FPLC (GE Healthcare), involving anion exchange on a Q-Sepharose column (1.6 × 25 cm column, GE Healthcare) followed by hydrophobic exchange with phenyl-Sepharose (0.5 × 5 cm column, GE Healthcare) [89 (link)]. Lf was purified from human skimmed breast milk following the procedure of Blackberg et al. [90 (link)]. Lf prepared by this method is predominantly in the apo form; however, to fully eliminate trace iron, samples were also incubated with sodium ascorbate before chromatographic purification. Saturation of iron in Lf to produce the holo-form was carried out with freshly prepared FeNTA solution (9.9 mM ferric nitrate, 8.5 mM nitrilotriacetic acid adjusted to pH 7.0) as previously described [91 ]. Unless otherwise stated, human Lf was predominantly used for experimental procedures.
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8

Bacterial Growth and Protein Purification

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Ingredients for bacterial growth and all reagents used for protein purification were from Sigma-Aldrich, except Phenyl-Sepharose, which was purchased from GE Healthcare. Pyridoxine 5'-phosphate was obtained from PLP (98% pure; Sigma-Aldrich) according to the method of Kazarinoff and McCormick (12 (link)).
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9

Purification of Biomolecules using Chromatography

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All chemicals were of the highest available purity and purchased from Sigma Aldrich (St. Louis, MO, USA). DEAE- and Phenyl-Sepharose chromatographic media were purchased from GE Healthcare.
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10

Lipase Immobilization and Characterization

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Agarose 10BCL was purchased from Agarose Beads Technologies (Madrid, Spain). Sulfopropyl sepharose, Butyl Sepharose, Octyl Sepharose and Phenyl Sepharose were purchased from GE Healthcare (Uppsala, Sweden). Immobeads-150 Octadecyl, Immobeads-300 Methyl-Estyrene, Lewatit 1600, Polyethyleneimine, Polyallylamine, p-nitrophenyl palmitate, docosahexaenoic acid, Burkholderia cepacia lipase (Amano), Thermomyceslanuginosus lipase (Novozymes), bovine serum albumin and dextran (Leuconostoc mesenteroides) were obtained from Sigma-Aldrich Co. (St. Louis, IL, USA). Methoxypolyethylene glycol amine (NH2-PEG) was purchased from Rapp Polymere GmbH (Tubingen, Germany). All other reagents were of analytical grade.
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