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Ha probe

Manufactured by Santa Cruz Biotechnology
Sourced in United States

The HA-probe is a laboratory tool used for the detection and identification of proteins containing the hemagglutinin (HA) tag. It functions as an antibody-based detection system specifically designed to recognize and bind to the HA tag, which is commonly used as a protein fusion tag in biological research.

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20 protocols using ha probe

1

Nitrogen Starvation Induces PnmB and PrtA Overexpression

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Strains were grown in 100 mL ANM liquid medium with supplements and 10 mM ammonium tartrate at 37 °C for 16 h. For nitrogen starvation, mycelia were washed with and transferred to pre-warmed nitrogen-free ANM media for the indicated amount of time. Xylose was added to the media at a final concentration of 1% to induce PnmB and PrtA overexpression in the respective overexpression strains. Mycelia were harvested on Miracloth, pressed dried, snap-frozen in liquid nitrogen, and kept at −80 °C until protein extraction. Total proteins were extracted as previously described19 (link). In all, 50 μg of total proteins were separated in 10% SDS-PAGE gel and transferred to PVDF membrane for immuno-detection. PnmBHA, NmrAFLAG, and histone H3 were detected using HA-probe (Santa Cruz sc-7392), anti-FLAG® M2 (Sigma F1804), and anti-Histone H3 (Abcam ab1791) antibodies, respectively, at the concentration of 0.1 µg/mL. Goat anti-mouse (Millipore AP124P) or goat anti-rabbit horseradish peroxidase (HRP)-conjugated (Millipore AP132P) antibodies were used as the secondary antibody at the concentration of 0.1 µg/mL for Chemiluminescence detection using Clarity™ Western ECL Substrate (Bio-rad 1705060) kit.
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2

Protein Extraction and Analysis Workflow

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Strains were first grown in ANM media containing supplements and 10 mM ammonium tartrate at 37 °C for 16 h, and then transferred to 10 ml nitrogen-free ANM media for an additional 4 h. For PnmB and PrtA overexpression, 1% xylose was added to the media. Mycelia were collected by filter with miracloth, and mycelia were subjected to total protein extraction as the intracellular fraction the TCA extraction method described above, while the conditioned growth media was further filtered using a 0.2 μm filter to remove all mycelia before protein extraction by a modified TCA method. Briefly, 10 μg BSA and 1 mL of ice-cold 100% TCA was added to 5 mL of filtered medium, and then 2 ml of the mixture was transferred to a microfuge tube and centrifuged at 4 °C 15000 rpm for 30 min. The protein pellet was washed with 1 mL ice-cold acetone and air-dried, followed by re-suspension in 50 μL protein loading buffer with incubation at 95 °C for 10 min. 50 μL secreted protein and 10 μg intracellular total protein was separated in 10% SDS-PAGE and subjected to western blot analysis using HA-probe (Santa Cruz sc-7392) and anti-Histone H3 (Abcam ab1791) antibodies at the concentration of 0.1 µg/mL.
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3

Mechanistic Investigation of ER Stress

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TMBIM6 (MA1-41108, anti-mouse, Invitrogen), GRP78 (sc-376768, anti-mouse, Santa-Cruz Biotechnology, Dallas TX, USA), GADD153/CHOP (sc-575, anti-rabbit, Santa-Cruz Biotechnology), IRE1α (sc-390960, anti-mouse, Santa-Cruz Biotechnology), HA probe (sc-805, anti-rabbit, Santa-Cruz Biotechnology), cysteine sulfonate (ab176487, anti-rabbit, Abcam, Cambridge, UK), 4-HNE (ab46545, anti-rabbit, Abcam), 8-OHdG (ab48508, anti-mouse, Abcam), β-galactosidase (sc-377257, anti-mouse, Santa-Cruz Biotechnology), cleaved-caspase-3 (9664S, anti-rabbit, Cell signaling), and iNOS (ab3523, anti-rabbit, Abcam).
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4

Adenoviral Transduction of Osteoblasts

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Adenovirus-GFP (as a control) and -ZIP8 (HA-tagged) were purchased from Applied Biological Materials, Inc. (Canada). At confluence, osteoblasts were infected with adenovirus for 36 h at a multiplicity of infection of 100, and followed by supplementing differentiation medium. Evaluation of adenoviral-ZIP8 infection was performed by Western blots using HA-probe (Santa Cruz Biotechnology, Inc.).
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5

Immunofluorescence and Immuno-EM Analysis

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IFA was carried out as previously described [48 (link),63 (link)]. Immuno-EM was performed at the Molecular Microbiology Imaging Facility at Washington University in St. Louis, MO. We used the following primary antibodies and dilutions: the HA probe (mouse, sc-7392, Santa Cruz Biotechnology; 1:300), the Myc probe (rabbit, 2278S, Cell signaling; 1:300), PfExp2 (rabbit, a kind gift from Dr. James Burns, Drexel University; 1:500), and PfPlasmepsin II (rabbit, Bei Resources, NIAID/NIH; 1:1000). We used fluorescently labeled secondary antibodies from Life Technologies (ThermoFisher Scientific) (anti-mouse or anti-rabbit, 1:300) or goat anti-mouse 18 nm colloidal gold-conjugated secondary antibody (Jackson ImmunoResearch Laboratories), as described previously [63 (link)]. Other details can be found [63 (link)].
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6

Antibody Acquisition and Protein Reagents

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Antibodies against E-cadherin, N-cadherin, and Matrigel basement matrix were purchased from BD Biosciences (San Jose, CA, USA). Antibodies against IGFBP-3, vimentin, myc, glutathione S-transferase (GST), His-probe, HA-probe, OctA-probe, IGF-1R, ubiquitin, and actin were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Antibodies against E-cadherin, N-cadherin, and tubulin were purchased from Cell Signaling Technology (Danvers, MA, USA). Horseradish peroxidase (HRP)-conjugated secondary antibodies were purchased from GeneTex (Irvine, CA, USA). Fluorochrome (Alexa Fluor 488, Alexa Fluor 546, or Alexa Fluor 594)-conjugated secondary antibodies were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Human recombinant IGFBP-3 was purchased from R&D Systems (Minneapolis, MN, USA). Human recombinant IGFBP-3 protein used or evaluation of cellular uptake of extracellular IGFBP-3 was kindly provided by Insmed Inc. (Glen Allen, VA, USA) [22 (link)]. 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) was purchased from MP Biomedicals (Santa Ana, CA, USA). G418 was purchased from Enzo Life Sciences (Farmingdale, NY, USA). Crystal violet, a mouse monoclonal anti-vimentin antibody, and additional chemicals unless otherwise indicated were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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7

Elucidate ER Stress Mechanisms

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Chemicals and materials were obtained from commercial sources as follows: streptozotocin (Sigma, USA) and BIX02189 (a specific inhibitor of MEK5 and ERK5 (Tatake et al., 2008 (link)) were purchased from Selleck Chemicals (USA). Antibodies were purchased from the following vendors: KDEL (Enzo Life Sciences, Lörrach, Germany), GADD, p-PERK, PERK, ATF4, and HA-probe (Santa Cruz, USA), p-elF2 α, eIF2α, p-ERK5, ERK5, caspase-3, and PARP-1 (Cell Life Sciences, USA) and α-tubulin (Sigma, USA).
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8

Investigating TNFAIP3-mediated NF-κB regulation

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Antibodies specific for TNFAIP3 N-terminus (sc-166692), TRAF6 (sc-8409, sc-7221), Actin (sc-1615), Ubc13 (sc-376470, sc-292618), TNFR1 (sc-8436), RIP (sc-7881, sc-133102), NEMO (sc-56919, sc-8330), Ub (sc-271289), Caspase-1 (sc-515 and sc-622), GFP (sc-8334), HA-probe (sc-7392), c-MYC (sc-40) from Santa Cruz; TNFAIP3 N-terminal specific (#5630), K63-linkage Polyubiquitin (#5621), Phospho-IKKα/β (#2697), IKKα (#11930), IκBα (#4814, #9242), Phospho-IκBα (#2859), NFκB P65 (#8242), TNFR1 (#3736), RIP (#3493), Phospho-p38 MAPK (#4511), Phospho-p44/42 MAPK (Erk1/2) (#4370), Phospho-SAPK/JNK (#4668), p44/42 MAPK (Erk1/2) (#4695), SAPK/JNK (#9252), p38 MAPK (#8690), HRP-linked anti-rabbit IgG (#7074), HRP-linked anti-mouse IgG (#7076) from Cell Signaling; IL-1 β (AF-201-NA) from R&D Systems; NLRP3 (ALX-804-819-C100) from Enzo Life Sciences. pRK5-HA-Ubiquitin-K63 (Addgene plasmid # 17606) was a gift from Ted Dawson43 . pEGFP-C1-TNFAIP3 (Addgene plasmid # 22141) was a gift from Yihong Ye 44 . Myc-DDK-tagged-human RIPK1 (RC216024), Myc-DDK-tagged-human NFKBIA (RC200711), untagged human TRAF6 (sc109845) were from Origene. 3xFlag-TNFAIP3 (Ex-K6040-M120) was from Genecopoeia. pEF-NEMO was a gift from Dr. Chi Ma45 . The GFP tagged or 3xFlag-TNFAIP3 mutant plasmids were constructed by PCR mutagenesis.
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9

Detecting Phosphorylated Snf1 in Yeast

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Snf1 tagged with three copies of the HA epitope was detected with a 1:3000 dilution of HA probe (Santa Cruz). Goat anti-mouse IgG DyLight 680 (Thermo) diluted 1:10,000 was used as the secondary antibody. For detection of phosphorylated Snf1, Phospho-AMPKalpha (Thr172) antibody (Cell Signaling) diluted 1:1000 was used. Goat anti-rabbit IRDye 800CW (Li-Cor) (1:10,000 dilution) was used as the secondary antibody. Blots were scanned by using an Odyssey scanner (Li-Cor). Integrated intensity values of bands were quantified by using Odyssey scanning software. Yeast extracts were prepared using the boiling method described by Kuchin and colleagues (19 (link)).
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10

Antibody-based Protein Detection Protocol

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Antibodies against CAMLG, NFAT2, NFAT4, HA-probe, and anti-Actin were from Santa Cruz Biotechnology, Inc. Anti-Flag, PMA, and calcium ionophore (A23187) were obtained from Sigma-Aldrich. CsA was obtained from TCI America.
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