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8 protocols using defatted milk

1

Protein Expression Analysis of PPFIA Family

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PPFIA1, PPFIA3, and PPFIA4 protein expression in NCM460, LoVo, and Hct116 cells and PPFIA4 protein expression in LoVo and Hct116 cells transfected with and without miRNA mimics and inhibitors were analyzed by western blotting. Cells were collected and lysed in cold lysis buffer (RIPA, Solarbio, China) for 30 minutes. Electrophoresis was performed to separate the samples on 8% sodium dodecyl sulfate-polyacrylamide gels. The separated proteins were transferred to polyvinylidene fluoride or polyvinylidene difluoride (PVDF) membranes (Millipore, USA). At room temperature, 5% defatted milk (BD Biosciences) was used to block the membranes containing proteins for two hours. The PVDF membranes were then incubated with the primary antibodies (Supplementary Table 2) at 4 °C for 16 hours. The next day, secondary antibodies reacted with the primary antibodies for 1.5 hours at room temperature. A ChemiDoc imaging system (Bio-Rad) was used to assess protein expression.
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2

Quantitative Multistrip Western Blotting of Oocyte and Embryonic Proteins

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Western blotting was performed using Multistrip Western blotting protocols described previously 67. Briefly, whole cell lysates from 500–1,500 oocytes or reconstructed embryos were lysed in beta‐mercaptoethanol‐containing loading buffer and heated at 95°C for 8 min. The embryonic lysates were separated by SDS–PAGE (90 V for 30 min, 30–50 V overnight, when the loading buffer is no longer on the gel, stop the electrophoresis). Following electrophoresis, the protein transferred from the gel to nitrocellulose membranes (Bio‐sharp, China). We next cut the membrane into two strips and blot separately. The membrane was followed by blocking in TBST containing 5% defatted milk (BD, USA) for 120 min at 4°C. After being probed with primary antibodies (overnight at 4°C), the membranes were washed in TBST, incubated with an HRP‐linked secondary antibody for 120 min at 37°C, and washed three times with TBST. Bound antibodies were detected with SuperSignal West Femto Substrate Trial Kit (Thermo, USA). The antibodies used are listed in IF section. Quantification analysis of band intensity was calculated by ImageJ software (NIH, Bethesda, USA, http://rsbweb.nih.gov/ij/).
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3

Western Blot Analysis of Zygotic Proteins

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Zygotes were lysed with SDS sample buffer (100 zygotes per sample) and heated for 5 min at 95 °C. Total zygotes proteins were separated by SDS-PAGE and electrophoretically transferred to PVDF membranes (Millipore, USA), followed by blocking in TBST containing 5% defatted milk (BD, USA) for 30 min. First, the membranes were incubated with primary antibodies overnight at 4 °C. Then, the membranes were washed in TBST, and incubated with a HRP-linked secondary antibody for 1 h at room temperature, followed by washing with TBST three times. Finally, bounding antibodies were detected using SuperSignal WestFemto maximum sensitivity substrate (Thermo Fisher, USA). The primary antibodies used and dilution factors are anti-DDB1 (Epitomics, #3821-1, 1:10000) and anti-FLAG antibodies (Sigma, #F3165, 1:3000). The secondary antibody was HRP-conjugated anti-rabbit/mouse IgG (Jackson ImmunoResearch Laboratories).
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4

Protein Expression Analysis of HCT116 and LoVo Cells

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The HCT116 and LoVo control cells without CoCl2treatment were collected when their confluence reached 80%. Likewise, the PGCCs and their generated daughter cells were collected when they attained a similar confluence. The cells were lysed on ice with 80‐150 μL of glacial radio‐immunoprecipitation assay (RIPA) lysis buffer (Roche, Germany) for 30 minutes, and then centrifuged at 14,000 rpm/min for 30 minutes at 4°C. The concentrations of the proteins were determined, and they were separated by 10% sodium dodecyl sulfate polyacrylamide gel (SDS‐PAGE). The protein bands were then transferred onto polyvinylidene fluoride (PVDF) membranes (GE, USA). The protein‐containing PVDF membranes were blocked with 5% defatted milk (BD, USA) in 1 × Tris‐buffered saline with 1% Tween‐20 (Sigma, USA) for 2 hours at room temperature. Then, the membranes were incubated with primary antibodies (Table S1) at 4°C for 14‐16 hours. The membranes were then incubated with secondary antibodies at room temperature for 2 hours. Protein expression was finally detected using the Chemidoc imaging system (BioRad, USA). The Image‐J software was used to analyze the gray value of each protein band after capturing images from the film processor. β‐actin was employed as a protein‐loading control, and all the western blot experimental results were repeated multiple times.
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5

Protein Expression Analysis in Mice

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Equal volume of serum or plasma of mice was diluted 1:10 with PBS (Hyclone, Utah, USA). Equal volumes of diluted samples were separated with 8% SDS-PAGE gel and transferred onto polyvinylidene difluoride (PVDF) membrane (Millipore, Massachusetts, USA). The membrane was blocked with 5% defatted milk (BD, California, USA) for 1 h at room temperature and immunoblotted with specific antibody overnight at 4°C followed by incubation with HRP-conjugated secondary antibody (ZSGB-Bio, Beijing, China) for 1 h at room temperature. The membrane was visualized by ECL (Thermo Fisher Scientific, Massachusetts, USA or GE Healthcare, USA) and exposed with chemiluminescence apparatus (Beijing Sage Creation, Beijing, China). Protein bands' gray values were measured by NIH Image J.
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6

Western Blot Analysis of PGCCs and Control Cells

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Hct116 and LoVo control cells without ATO treatment and PGCCs with daughter cells after ATO treatment were collected when approximately 80% confluence was reached. The cells were lysed on ice with approximately 100 μL of glacial radio-immunoprecipitation assay lysis buffer (Roche, Germany) for 30 min and then centrifuged at 14,000 rpm for 30 min at 4°C. The concentrations of the proteins were determined and separated by 10% sodium dodecyl sulfate-polyacrylamide gel. The protein bands were transferred onto polyvinylidene fluoride membranes (GE, USA). These membranes were blocked with 5% defatted milk (BD, USA) in 1 × Tris-buffered saline with 1% Tween-20 (Sigma, USA) for 2 h at room temperature. The membranes were then incubated with primary antibodies (Supplementary Table 1) at 4°C for 12 h. Subsequently, the membranes were incubated with secondary antibodies at room temperature for approximately 2 h. β-Actin was used as a protein-loading control. Protein expression was detected using a ChemiDoc imaging system (BioRad, USA).
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7

Western Blot Analysis of Testes Proteins

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Testes were lysed with SDS sample buffer and heated for 5 min at 95°C. Samples were separated by SDS–polyacrylamide gel electrophoresis and electrophoretically transferred to polyvinylidene difluoride membranes (Millipore Corp., Bedford, MA, USA), followed by blocking in tris-buffered saline with Tween 20 (TBST) containing 5% defatted milk (BD Biosciences, Franklin Lakes, NJ, USA) for 30 min. After probing with primary antibodies, the membranes were washed in TBST, incubated with a horseradish peroxidase–linked secondary antibody (Jackson ImmunoResearch Laboratories) for 1 hour, followed by three washes with TBST. Bound antibodies were detected using the SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Fisher Scientific Inc., Waltham, MA, USA). The primary antibodies and dilution factors used are listed in table S3.
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8

Western Blot Protocol for Tissue Samples

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The cells were lysed as described above. For graft tissue, 20 mg of tissue was weighed, 200μl RIPA buffer was added, and the tissues were then lysed on ice. The remaining steps were the same as those used for cell lysis. Protein samples were loaded on 8% or 10% sodium dodecyl sulfate-polyacrylamide gels and then separated by electrophoresis. After that, the separated proteins were transferred onto PVDF membranes (Millipore, USA). The membranes containing proteins were soaked in 5% defatted milk (BD, USA) up to 2 h at room temperature for blocking. The membranes were then incubated with primary antibodies (Supplementary Table 1) at 4 °C last at least overnight. Next day, secondary antibodies were used to react with primary antibodies through incubating for 2 h at room temperature. Protein expression was evaluated using a ChemiDoc imaging system (Bio-Rad, USA).
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