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44 protocols using anti nrf2

1

Inflammatory Response Modulation: A Comprehensive Protocol

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IL-1β (Pepro Tech, USA), Forskolin (APExBIO Technology, USA), SFN (APExBIO Technology, USA), Rat IL-1β ELISA Kit (Elabscience, China), Rat TNF-α ELISA Kit (Elabscience, China). For immunohistochemical and immunofluorescence analyses, the following antibodies were used: anti-BMAL1 (Abcam, #ab3350), anti-NRF2 (Proteintech, #16396-1-AP), anti-Aggrecan (Proteintech, #13880-1-AP), anti-MMP13 (Abcam, #ab39012), anti-p65 (Santa Cruz Biotechnology, #(F-6): sc-8008), anti-Phospho-p65(Santa Cruz Biotechnology, #(A-8): sc-166748), and GAPDH (Proteintech, #60004-1-lg). For immunohistochemical and immunofluorescence analyses, the following antibodies were used: anti-BMAL1 (Abcam, #ab3350), anti-NRF2 (Proteintech, #16396-1-AP), anti-Aggrecan (Proteintech, #13880-1-AP), anti-MMP13 (Abcam, #ab39012), and anti-p65(Invitrogen, PA5-16545).
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2

Immunofluorescence Analysis of MRC1, CD133, and Nrf2

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Cells were fixed with 4% paraformaldehyde, followed by antigen retrieval (for MRC1) in Tris–EDTA buffer (pH 9.0) or permeabilization (for Nrf2 and CD133) in 0.1% Triton X-100 for 5–10 min. Nonspecific binding sites were blocked with 10% fetal bovine serum (FBS) for 20 min, followed by incubation with an anti-MRC1 (Southern Biotech, Birmingham, USA) used at a dilution of 1:50, anti-chicken CD133 (self-prepared) or anti-Nrf2 (Proteintech, Wuhan, China) at 1:200 overnight at 4 °C. The primary antibody detection was performed with an FITC-labeled or Alexa Fluor 568-conjugated secondary antibody (Abcam, Cambridge, UK). Nuclei were visualized with DAPI (4′-6-diamidino-2-phenylindole) for 5 min. Cells were observed with a fluorescence microscope and photographed. MRC1+ and CD133+ cells in each well were counted in 6 randomly selected high-power fields (× 200).
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3

DMEM/F-12 and FBS for Cell Culture

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Dulbecco’s modified eagle medium (DMEM)/F-12 medium and fetal bovine serum (FBS) were obtained from Gibco Life Technologies (Carlsbad, CA, USA). Oleic acid, linOleic acid, palmitic acid, palmitOleic acid, and stearic acid with 99% purity were from Sigma-Aldrich (St. Louis, MO, USA). N-acetyl cysteine (NAC), RIPA lysate, PMSF, and BCA assay were from Beyotime Biotechnology (Shanghai, China). Anti-ERK1/2, anti-pERK1/2, and anti-α-Tubulin were from Cell Signaling Technology (Danvers, Essex, MA, USA). Anti-Nrf2, anti-HO-1, anti-Bax, -Bcl-2, -cleaved caspase-3, -SOD2, -Histone, -CHOP, -GRP78, -p-PERK, -GAPDH antibodies were purchased from Proteintech (Chicago, CA, USA). The anti-p53 antibody was from ABCAm (Cambridge, Cambridgeshire, UK). The secondary antibody and ECL were from Biosharp (Hefei, China). Annexin V- Alexa Fluor 647/PI double-staining kit was purchased from Fumaisi (FMSAV647-100, FcMACS, Nanjing, China). The concentration of stock NEFA solution was 50 mM, containing 21.75 mM Oleic acid, 15.95 mM palmitic acid, 7.2 mM stearic acid, 2.65 mM palmitOleic acid, and 2.45 mM linOleic acid.
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4

Quantifying Protein Levels via Immunoblotting

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To measure protein levels, immunoblot analysis was conducted based on a previously published protocol [6 (link)]. The samples were lysed using RIPA buffer (#P0013B, Beyotime Biotechnology, Shanghai, China). An equal amount of protein (20 mg) was loaded onto an SDS-polyacrylamide gel and transferred to the polyvinylidene fluoride (PVDF) membrane. The membranes were blocked with 4% bovine serum albumin (BSA, #ST023, Beyotime Biotechnology), followed by overnight incubation with primary antibodies at 4 °C. Afterwards, the membranes were incubated with appropriate secondary antibodies. After washing, the membranes were visualized using ECL (#P0018FS, Beyotime Biotechnology). The antibodies contained anti-NRF2 (1:1000, #16396-1-AP, Proteintech, Wuhan, China), anti-GAPDH (1:10000, #10494-1-AP, Proteintech, Chicago, IL, USA), anti-KEAP1 (1:1000, #80744-1-RR, Proteintech), and HRP-conjugated anti-rabbit IgG antibody (#7074, Cell Signaling Technology, Danvers, MA, USA).
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5

Antioxidant Potential of LPF Peptide

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LPF peptide was synthesized by Genscript Biotech Corporation (Nanjing, China). D-glucose (G8270) and MTT (M2003) were purchased from Sigma. 2,2′-Azobis(2-methylpropionamidine) dihydrochloride (AAPH, A101386) was from Aladdin Biochemical Technology (Shanghai, China). Sodium fluorescein and 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox) were from Wako Pure Chemical (Osaka, Japan). Anti-O-GlcNAc antibody (CTD110.6) (sc-59623) was from Santa Cruz Biotechnology. Lipid Peroxidation Assay Kit (S0131S), Glutathione (GSH) Assay Kit (S0052), Hematoxylin and Eosin Staining Kit (C0105S), DAPI (C1002), and H2DCFDA (S0033S) were purchased from Beyotime Biotechnology (Shanghai, China). Anti-Pax3 antibody was from DSHB. Primary antibodies, anti-NRF2 and anti-Keap1, were purchased from Proteintech. Anti-β-Actin and HRP-conjugated secondary anti-rabbit and anti-mouse antibodies were purchased from Fude Biological Technology (Hangzhou, China). Alexa Fluor 488 goat anti-rabbit IgG was purchased from Invitrogen (Carlsbad, CA, USA).
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6

Immunoblotting Antibody Protocols

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For immunoblotting, antibodies used in this study were purchased from EMD Millipore (Oakville, Canada), Sigma Aldrich (Oakville, Canada), Proteintech (Illinois, USA), and Cell Signaling Technology (Whitby, Ontario). The following primary antibody was used from EMD Millipore (Oakville, Canada): anti-androgen receptor (Millipore Cat# 06-680, 1:1,000). The following primary antibodies were used from Sigma Aldrich (Oakville, Canada): anti-fast skeletal myosin (M4267, 1:15,000), anti-slow skeletal myosin (Sigma-Aldrich Cat# M8421, 1:10,000), and anti-beta actin (Sigma-Aldrich Cat# A2066, 1:10,000). The following primary antibodies were used from Proteintech (Illinois, USA): anti-PGC1α (Proteintech Cat# 66369-1-Ig, 1:5,000), anti-NRF-2 (Proteintech Cat# 16396-1-AP, 1:500), and anti-TFAM (Proteintech Cat# 22586-1-AP, 1:1,000). The following HRP-conjugated secondary antibodies were used from Cell Signaling Technology (Whitby, Ontario): goat anti-rabbit IgG, HRP-linked (Cell Signaling Technology Cat# 7074, 1:5,000) and horse anti-mouse IgG, HRP-linked (Cell Signaling Technology Cat# 7076, 1:5,000).
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7

Protein Extraction and Immunoblotting Analysis

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Specific details regarding protein extraction were described in our published paper [21 (link)]. The primary detection antibodies used in our experiment were anti-beta-actin (1:1000, Proteintech, Rosemont, IL, USA), anti-Sirt7 (1:1000, Santa, Dallas, TX, USA), anti-alkaline phosphatase (ALP) (1:1000, ABclonal, Wuhan, China), anti-MCP-1 (1:1000, ABclonal, Wuhan, China), anti-Nrf2 (1:1000, Proteintech, Rosemont, IL, USA), anti-NQO1 (1:1000, Proteintech, USA), anti-Hmox1 (1:1000, Proteintech, Rosemont, IL, USA), anti-ICAM-1 (1:1000, Abcam, Waltham, MA, USA), anti-BAX (1:1000, CST, Boston, MA, USA), anti-runt-related transcription factor 2 (Runx2) (1:1000, Proteintech, Rosemont, IL USA) and anti-cleaved caspase3 (1:1000, CST, Boston, MA, USA). The secondary antibodies used were goat anti-rabbit and anti-mouse IgG-HRP (1:5000, Fudebio, Hangzhou, China). The quantitation of Immunoblotting images was analyzed using ImageJ software (NIH, Bethesda, MA, USA).
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8

Osteogenic Differentiation and Antioxidant Effects of AU

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hBM-MSCs were differentiated in osteogenic differentiation medium adding AU (0, 0.01, 0.1, 1 μM) for 3 days. With regard to inhibitor studies, cells were treated with AU (1 μM) and noggin (100 ng/mL) /LDN193189 (100 nM) for 3 days. Pertaining to AU antioxidant injury studies, cells were treated with both 1 μM AU and 300 μM H2O2 for 3 days. The ODM adding AU and H2O2 was changed after 2 days of osteogenesis. Thereafter, cells were treated with 4% paraformaldehyde for 15 min at room temperature. After washing with PBS for three times (3 min each), the cells were incubated for 5 min with 0.1% TritonX-100 in PBS and blocked in 5% bovine serum albumin for 30 min. Treated cells were washed for three times and incubated with primary antibodies (anti-COL1A1 (1:200; Abcam), anti-RUNX2 (1:200; Abcam) and anti-Nrf2 (1:200; Proteintech)) at 4 °C for at least 12 h. Then the cells were incubated with fluorescence-conjugated secondary antibody for 1 h and stained with DAPI staining solution (Nanjing KeyGen Biotech, Nanjing, China). A fluorescent microscope (Leica Camera) was used to capture the images, and the fields were randomly selected.
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9

Immunohistochemical Analysis of Tumor Markers

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The IHC protocol was performed as described previously [15 (link)]. Briefly, tumour sections of patients and nude mouse xenografts were analysed by IHC using the EnVision™ System (Dako, Carpinteria, CA). Primary antibodies used for IHC were anti-BDH2 (1:100, Proteintech, 27,207), anti-Ki67 (1:100, Abcam, ab15580), anti-cleaved caspase-3 (1:200, CST, #9661), anti-LC3B (1:200, Abcam, ab48394), anti-Nrf2 (1:50, Proteintech, 16,396), anti-p-Akt (1:100, Proteintech, 66,444), and anti-p-mTOR (1:100, Abcam, ab109268).
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10

Western Blot Analysis of Cellular Signaling

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Total protein separation and western blotting were performed as described previously [16 (link)]. Western blot analysis was performed using anti-cleaved PARP (#5625), anti-cleaved caspase-3 (#9661), anti-p-AMPK (Thr172) (#50081), anti-p-ERK1/2 (#4370), and anti-HA-Tag (#3724) antibodies purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-LC3 (14600–1-AP), anti-P62/SQSTM1 (18420–1-AP), anti-phospho-Akt (Ser-473) (66444–1-Ig), anti-Akt (10176–2-AP), anti-mTOR (20657–1-AP), anti-P38 MAPK (14064–1-AP), anti-JNK (51151–1-AP), anti-ERK1/2 (16443–1-AP), anti-AMPK (10929–2-AP), anti-Nrf2 (16396–1-AP), anti-Keap1 (10503–2-AP), anti-FLAG-tag (66008–2-AP), anti-MYC-tag (60003–2-AP), and anti-β-actin (66009–1-Ig) antibodies were obtained from Proteintech Group Co., Ltd. (Wuhan, China). An anti-phospho-mTOR (Ser-2448) (ab109268) antibody was purchased from Abcam (Cambridge, MA, USA). Anti-p-p38 (sc-7973), anti-p-JNK (sc-6254), and anti-Ub (sc-8017) antibodies were obtained from Santa Cruz Biotechnology., Inc. (Santa Cruz, CA, USA).
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