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15 protocols using np 40 lysis buffer

1

Western Blot Analysis of NLRP3 Inflammasome

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Stomach tissues were immersed in NP40 lysis buffer (Solarbio, China) supplemented with protease and phosphatase inhibitors, and sonicated on ice. The homogenates were centrifuged at 15,000× g for 15 min, and the supernatants were aspirated. The protein concentration was assessed using bicinchoninic acid protein assay kit (Beyotime, China), and equal amounts of protein per sample were fractionated by sodium dodecyl sulfate polyacrylamide gel electrophoresis using a 10% gel. The protein bands were transferred onto nitrocellulose filter membranes, blocked with 5% non-fat milk for 1 h at room temperature, and then incubated overnight with anticleaved caspase-1 (Asp296; CST, Cat. no. 67314), anticaspase-1 (Abcam, Cat. no. ab138483), anti-IL-1β (3A6; CST, Cat. no. 12242), anticleaved-IL-1β (Asp117; CST, Cat. no. 52718), antinuclear factor kappa B (anti-NF-κB) p65 (Abcam, Cat. no. ab32536), and anti-NLRP3 (Abcam, Cat. no. ab210491) primary antibodies at 4°C. The membranes were then probed with horseradish peroxidase-conjugated secondary antibodies for 1 h at room temperature and visualized using chemiluminescent reagents (Millipore, USA). β-Actin was used as the internal control.
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2

Western Blot Analysis of Protein Expression

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NP-40 lysis buffer (Solarbio, China), PMSF(Solarbio, China) ,and Protease Inhibitor Cocktail(Solarbio, China)were used to extract proteins. Total proteins were transferred to PDVF membranes (GE, America) from 10% SDS–PAGE after determining the protein content (BCA Protein Colorimetric Assay Kit, Elabscience, China). Membranes were incubated in primary antibodies α-SMA (1:1000), Smad2 (1: 2000), Smad3 (1: 1000), phospho-Smad2 (1: 5000), phospho-Smad3 (1: 2000), and p38MAPK (1: 500) at 4 °C overnight. After washing, membranes were incubated with secondary antibodies (Rabbit anti-Goat IgG–HRP, abisin, China at room temperature for 2 h. Chemiluminescence was performed with Thermo ECL (elabscience, China and visualization was done with a Tanon gel imager. We used the Image J software to quantify using β-actin as an internal standard. This experiment was repeated three times to obtain average values.
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3

Flavonoid-mediated Regulation of Signaling Pathways

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When the HeLa cells reached the 80–90% confluence, they were seeded and cultured for 12 hours. At the 12th hour, 20 μM or 50 μM flavonoids (Chengdu Biopurify, China) were added into the well of cell cultured plates and cultured for another 12 hours. At the 24th hour, the cells were lysed with NP40 lysis buffer (Solarbio, China), and the total protein was prepared and boiled for degeneration. 30 μg total protein was loaded into the SDS-PAGE and run for 2 hours. After 2 hours, the protein samples in gels were transferred to the PVDF membrane (Millipore, USA), blocked with 5% skim milk, and then were incubated with the primary antibody of TGFβ, mTOR, p70S6K, 4EBP1, p-mTOR, p-p70S6K, p-4EBP1, E-cadherin, Snail, FAK, and p-FAK (Proteinteck, China) for immunoreaction, then washed, incubated with secondary antibody, and visualized using an enhanced chemiluminescence system (Proteinteck, China).
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4

RIP Assay for AGO2-bound RNA

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The RIP assay was carried out using a commercial RIP kit (BersinBio, Guangzhou, China) and antibodies against IgG (SPA201; Solarbio) and AGO2 (FNab10000; FineTest, Hubei, China). TPC1 cells were lysed with NP-40 Lysis Buffer (Solarbio) and centrifuged at 13,000 × g for 5 min. The collected supernatant was incubated with 300 μL of RIP buffer containing beads coated with the indicated antibodies for 12 h at 4 °C. After centrifugation at 3,000 × g for 60 s, the supernatant was discarded and the beads were washed five times with PBS, followed by digestion with proteinase K. RNA was extracted using TRIzol reagent and subjected to qRT-PCR.
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5

Identifying pUL10 Glycosylation Patterns

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To detect the type of pUL10 glycosylation modification in transfection and infection, DEFs in 6-well plates were transfected with 4,000 ng of pCAGGS-UL10-3HA or 2,000 ng of pCAGGS-UL10-3HA plus 2,000 ng of pCAGGS-UL49.5-Flag using 8 μL of PlusTrans transfection reagent (CT801, nulenbiotech; http://www.nulenbio.com/). In some cases, DEFs in 6-well plates were infected with BAC-DPV-UL10-HA (MOI of 1). DEFs in 6-well plates were infected with 106 TCID50 of BAC-DPV-ΔUL49.5, BAC-DPV, and BAC-DPV-ΔUL49.5 R for detecting the changes in pUL10 glycosylation modification in the absence of pUL49.5. Cell debris was collected by NP-40 lysis buffer (N8032, Solarbio) at 48 h postinfection or posttransfection and clarified by centrifugation at 12,000 rpm for 15 min at 4°C. PNGase F (P0704S, NEB), PNGase A (P0707S, NEB), Endo H (P0702S, NEB), and O-glycosidase (P0733S, NEB) were used to explore the type of pUL10 glycosylation. According to the manufacturers′ protocol, enzymes and appropriate buffer were added to cell lysates, which were incubated at 37°C for 1.5 h (Endo H, PNGase A, and PNGase F) or 4 h (O-glycosidase). The samples were then subjected to Western blot analysis.
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6

Immunoprecipitation and Western Blotting

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Cells were lysed in pre‐cooled NP‐40 lysis buffer (Solarbio) which was containing 1% PMSF. Cell lysates were incubated with indicated antibody for 2 h followed by incubation with Protein‐G beads for 2 h at 4 °C. After washing for three times, the proteins were separated by SDS/PAGE and proceeded for western blotting.
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7

Immunoprecipitation of Protein Complexes

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LX-2 cells were lysed in NP-40 lysis buffer (Solarbio® Life Sciences, China) supplemented with protease inhibitor cocktail (PIC) (Solarbio® Life Sciences, China) for 30 min on ice. The lysates were clarified by centrifugation at 12,000 rpm for 15 min at 4 °C, and then incubated with antibodies (Supplementary Table 1) for overnight at 4 °C followed by mixing with protein A/G magnetic beads (MCE, China). HEK293T cells were co-transfected with His-HSPC111 and Flag-ACLY lentivirus were lysed with NP-40 lysis buffer. Then the cell lysate was mixed with His antibody or Flag antibody for overnight at 4 °C followed by incubation with Anti-His Magnetic Beads (Sango Biotech, China) and Anti-Flag Magnetic Beads (MCE, China), respectively. Immunocomplexes were washed and boiled for western blot analysis.
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8

CD82 Protein Immunoprecipitation Assay

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The transfected MDA-MB-231 cells were collected and lysed with NP-40 Lysis Buffer (N8032; Solarbio, Beijing, China) supplemented with protease inhibitor (Beyotime) according to the manufacturer’s instructions. A total of 500 μg of cellular extract was incubated with mouse immunoglobin G (ABclonal) at 4°C overnight. Protein A+G Agarose beads (P2055; Beyotime) and appropriate anti-CD82 primary antibody (ab59509; Abcam) were used for co-immunoprecipitation overnight at 4°C. After being washed with PBS three times, the beads were heated at 100°C for 5 min so that the proteins were dissociated from the beads, and then centrifuged to collect the protein. Finally, the target protein was detected by western blot analysis.
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9

Investigating HSV-1 Protein Interactions

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DEFs in 12-well plates were transfected with 2,000 ng of pCAGGS, 1,000 ng of pCAGGS-UL10-3HA plus 1,000 ng pCAGGS, 1,000 ng of pCAGGS-UL49.5-Flag plus 1,000 ng of pCAGGS, 1,000 ng of pCAGGS-UL10-3HA plus 1,000 ng of pCAGGS-UL49.5-Flag, 1,000 ng of pCAGGS-UL10(C54A)-3HA plus 1,000 ng of pCAGGS-UL49.5-Flag, 1,000 ng of pCAGGS-UL10-3HA plus 1,000 ng of pCAGGS-UL49.5(C46A)-Flag, and 1,000 ng of pCAGGS-UL10(C54A)-3HA plus 1,000 ng of pCAGGS-UL49.5(C46A)-Flag. Cell lysates were collected by NP-40 lysis buffer (N8032, Solarbio) at 36 h posttransfection and clarified by centrifugation at 12,000 rpm for 15 min at 4°C. Each set of samples was divided into two parts: one was treated with β-ME, and the other was treated without β-ME. The samples were identified by WB analysis.
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10

Western Blot Protocol for Protein Detection

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Cells were collected, lysed with NP40 lysis buffer (Solarbio, China), and then boiled with 5× sample loading buffer. Equal amounts of protein were separated using 12% SDS-PAGE gels and transferred onto PVDF membranes, as described previously (52 (link)). The PVDF membranes were blocked with 5% non-fat dry milk, and specific antibodies were used to probe for different target proteins. Tubulin served as the control. Finally, the blots were observed and imaged using the ChemiDoc XRS imaging system (Bio-Rad, USA).
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