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8 protocols using ab37977

1

Western Blot Antibody Protocol

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The antibodies used for Western blotting in this study were: hTERT (1531-1, clone Y182, Epitomics), SK2 (ab37977, Abcam), MKRN1 (ab72054, Abcam), rabbit V5 (ab9116, Abcam), Ubiquitin (3933S, Cell Signaling Technology), HA (3724, Cell Signaling Technology), Calnexin (Sc6465, Santa Cruz Biotechnology), Lamin B (Sc6216, Santa Cruz Biotechnology), mouse V5 (R96025, Invitrogen, USA).
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2

Visualizing DENV Infection and SPHK2 Localization

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Cells were seeded on a glass cover slip for 24 hours before experiment. HepG2 cells were infected with DENV at the MOI of 5. Huh7 cells and A549 cells were infected with DENV at the MOI of 1. After 24 hours post infection, cells were fixed by incubation with 4% paraformaldehyde at room temperature for 20 minutes. Cells were washed and permeabilized by incubation with 0.2% Triton-X (Sigma-Aldrich Corporation, St. Louis, MO, USA) at room temperature for 10 minutes. Thereafter, cells were incubated with both mouse anti-DENV E monoclonal antibody (Clone 4G2) and rabbit anti-SPHK2 (ab37977, Abcam) at a dilution of 1:50 at 37°C for 60 minutes. Cells were washed and incubated with secondary antibodies containing goat anti-mouse IgG-Cy3 (A10521, Molecular Probes) and donkey anti-rabbit IgG-Alexa 488 (A21206, Molecular Probes) at a dilution of 1:500 at 37°C in the dark for 1 hour. Hoechst 33342 solution (H3570, Molecular Probes) was added at a dilution of 1:1000 for nuclear detection. After the washing step, cover slips were mounted onto a glass slide using 50% glycerol, sealed, and subject to fluorescent image capture using confocal microscopy (LSM 510 Meta; Carl Zeiss Microscopy GmbH, Jena, Germany).
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3

Protein Extraction and Western Blotting

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Protein extraction was performed in cultured cells and HCT-116 or HCT-116Sphk2 xenografted nude mice. The cultured cells were lysed and protein was extracted using standard methods. In HCT-116 or HCT-116Sphk2 xenografts, tumors were homogenized and protein was extracted as described previously [37 (link)]. Protein concentration was determined with a BCA kit (Thermo Fisher Scientific). Western blotting assays were performed to determine protein expression. The bound antibodies were visualized with an enhanced chemiluminescence reagent and quantified by densitometry using a FluorChem FC3 image analyzer (Molecular Devices). Densitometric analyses of bands were adjusted with β-actin (Sigma-Aldrich) as a loading control. Primary antibodies included Sphk2 (ab37977, Abcam), RXRα (3085), ubiquitin (3933), K48-linkage specific polyubiquitin (8081), K63-linkage specific polyubiquitin (5621), TRAF2 antibody sampler kit (8347), LC3 (3868), Beclin-1 (3738), SQSTM1/p62 (5114, Cell Signaling), RARβ (sc-552, Santa Cruz).
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4

Immunofluorescence Staining of BV2 Cells

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BV2 cells were fixed with 4% paraformaldehyde for 1 h on ice, and permeabilized with 0.1% Triton X-100 in PBS for 5 min at room temperature. Then, they were blocked with 5% milk at room temperature for 1 h. Next, they were incubated with primary antibodies for FAAH (#101600, 1:100, Cayman Chemical, Ann Arbor, MI, USA), SphK1 (#10670-1-AP, 1:100, Proteintech, Manchester, UK; #Sc-365401, 1:100, Santa Cruz Biotechnology, Heidelberg, Germany) or SphK2 (#ab37977, 1:50, Abcam, Cambridge, UK) for 1 h at room temperature. Thereafter, an incubation with Alexa Fluor 488-conjugated secondary antibodies (1:1000) was performed for 1 h in the dark at room temperature. Finally, the cells were washed with PBS and stained with DAPI (1 µg/mL) for 90 s in the dark at room temperature. Confocal laser scanning microscopy was performed with a Zeiss LSM510 Meta system equipped with an inverted Observer Z1 microscope and a Plan-Apochromat 63×/1.4 oil immersion objective (Carl Zeiss MicroImaging GmbH, Jena, Germany). The following excitation (ex) laser lines and emission (em) filter sets were used: DAPI: ex 405 nm, em band-pass 420–480 nm; Alexa Fluor 488: ex 488 nm, em long-pass 505 nm. Spatial calibration of the images was carried out with the “set scale” function. Microscopic images were processed with the ZEN software v.2009 (Carl Zeiss MicroImaging GmbH).
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5

Immunoblotting of Membrane Protein Levels

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Immunoblotting was performed as previously described (12 (link)). Protein levels of S1PR1 (Y080010, ABM Inc, Richmond, Canada; 1: 1,000), SphK1 (sc-48825, Santa Cruz Biotechnology, Dallas, Texas; 1: 1,000), SphK2 (ab37977, Abcam, Cambridge, Massachusetts, 1: 1,000), β3AR (PAB8502, Abnova, Walnut, California, 1: 1,000); glyceraldehyde-3-phosphate dehydrogenase (sc-32233, 6C5, Santa Cruz Biotechnology, Dallas, Texas, 1: 2,000) were assessed. Plasma membrane proteins were isolated from NRVMs, as previously described (12 (link)).
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6

Immunoblotting analysis of U2OS cells

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For experiments where U2OS cells were exposed to compound for less than 24 h, 60,000 cells/well were seeded onto 12-well plates. For the experiments comparing cells growing in 10% FCS/starvation for all U2OS (30,000/60,000 cells/well), MCF7 and RPE (40,000/80,000 cells/well). RIPA buffer with protease and phosphatase inhibitors (Sigma, Germany) was used for preparing protein lysates from U2OS cells treated as indicated. Immunoblotting was performed following standard protocols with indicated antibodies: ATF4 (D4B8) (1:500 or 1:50, Cell Signaling Technology, 11815S), p-P70S6K (Thr389) (1:1,000, Cell Signaling Technology, 9205), 4E-BP1 (1:1,000, Cell Signaling Tech, 9452S), p-eIF2α (phospho S51) [E90] (1:1,000, Abcam, ab32157), eIF2α (1:500, Cell Signaling Technology, 9722), Vinculin (EPR8185) (1:2,000, Abcam, ab129002), PERK (D11A8) (1:500, Cell Signaling Technology, 5683), SPHK1(D1H1L) (1:500, Cell Signaling Technology, 12071S), SPHK2 (1:50, Abcam, ab37977), and GAPDH (1:100, Abcam, ab9485). Protein bands were visualized by chemiluminescence (either with ECL, Thermo Scientific, 34076, or Amersham ECL, GE Healthcare, RPN2235) and imaged on an Amersham Imager 600 (GE Healthcare, USA). In order to detect changes in SPHK2, and ATF4 simultaneously, samples were analyzed using JESS/WES immunoblot system (ProteinSimple, USA).
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7

Exosomal Protein Expression Analysis

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For Western blots of Tsg101, CD81, CD63, EEA-1, Grp78, α-actin, neutral ceramidase and SK in exosomes as well as SK in hepatocytes, the samples were resuspended in 5x SDS sample buffer, separated by 4–20% SDS-PAGE and developed using anti-TSG101 (ab83, Abcam Inc.), anti-CD81 (Eat2, Abd Serotec, Oxford, UK), anti-CD63 (AD1, BD Biosciences, Mountain View, CA), anti-EEA-1 (EEA-1, BD Biosciences Inc.), anti-Grp78 (BiP, BD Biosciences Inc.), α-actin (ab8227, Abcam Inc.), anti-neutral ceramidase (H300, Santa Cruz Inc.), anti-SK1 (M209, Santa Cruz Inc.), and anti-SK2 (ab37977, Abcam Inc.) antibodies followed by ECL.
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8

Immunoblotting of HCV and SPHK Proteins

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Immunoblotting was carried out using standard methods with the following antibodies: mouse monoclonal antibodies to β-actin (AC-74, Sigma, 1:10,000), HCV NS3 (ab65407, abcam, 1:500); and rabbit polyclonal antibodies to SPHK1 (A302-177A, Bethyl Laboratories, 1:2000), SPHK2 (ab37977, abcam, 1:500). Protein bands were visualized and quantified with an Odyssey Infrared Imaging System (Li-Cor Biosciences).
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