The largest database of trusted experimental protocols

13 protocols using al177

1

Detailed Immunological Reagents Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ultrapure lipopolysaccharide (LPS) (E. coli 0111:B4, cat. no. tlrl-3pelps), standard LPS (E. coli 0111:B4, cat. no. tlrl-eblps), ATP (cat. no. tlrl-atpl), nigericin (cat. no. tlrl-nig), and MSU (cat. no. tlrl-msu) were purchased from InvivoGen, lipofectamine 3,000 transfection reagent (cat. no. L3000015) was purchased from Thermo Fisher, C646 (S7152) was bought from Selleck Chemicals, mouse immunoglobin IgG protein (cat. no. ab198772) was purchased from Abcam, Protein A/G PLUS-Agarose (cat. no. sc-2003) was obtained from Santa Cruz, cell lysis buffer (CLB) (cat. no. 9803) was purchased from Cell Signaling Technology, and mouse IL-1β (cat. no. 88–7013), tumor necrosis factor-α (TNF-α) (cat. no. 88-7324), interleukin-6 (IL-6) (cat. no. 88-701364), and human IL-1β (cat. no. BMS22) ELISA kits were purchased from Thermo Fisher.
Anti–IL-1β (1:1,000, AF-401-NA; RRID:AB_416,684) was purchased from RD System, anti-NLRP3 (1:1,000, Cryo-2) and ASC (1:1,000, AL177) were purchased from Adipogen, anti–caspase-1 (1:1,000, ab179515), and anti-NEK7 (1:5,000, ab133514) were purchased from Abcam; Anti–β-actin (1:10,000, BH10D10), anti-p65 antibody (1:1,000, 8242), anti–p-p65 antibody (1:1,000, 3033), and GAPDH antibody (1:2,000, 5,174) were purchased from Cell Signaling Technology, and DyLight 488–labeled secondary antibody (1:50, A120-100D2) was purchased from InvivoGen.
+ Open protocol
+ Expand
2

Western Blot Analysis of Inflammasome

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein lysates from splenic cells were harvested by RIPA buffer as previously described (10 (link)), heat denatured in sample buffer (125 mM Tris-HCl, pH 6.8, 4% SDS, 20% glycerol, 5% β-mercaptoethanol, 0.01% bromophenol blue) and resolved through 10-15% SDS-polyacrylamide gel by electrophoresis, then transferred to Immobilon-FL membrane (Millipore). Membranes were treated with blocking buffer (LI-COR) then probed with primary and secondary antibodies conjugated with fluorophore, and visualized and quantified using the Odyssey Imaging System (LI-COR). Lysates were probed with anti-IL1β, -IL18, -CASP1-p10 (sc-514 Santa Cruz Biotechnology Inc.), anti-apoptosis-associated speck-like protein containing a CARD (ASC) and -NOD-, LRR- and pyrin domain-containing protein 3 (NLRP3) antibodies (AL177 and Cryo-2, respectively, Adipogen), -eukaryotic initiation factor 2 (Eif2) and -phospho-Eif2 Ser51) (#9722 and 119A11, respectively, Cell Signaling Technology) and protein loading was assessed with anti-β-actin (ab8226 Abcam) or -α-tubulin (3873 Cell Signaling) antibodies.
+ Open protocol
+ Expand
3

Immunofluorescence Staining of Macrophages

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary peritoneal macrophages were seeded in chamber slides and the following day, the cells were given with indicated stimuli. Then we used 4% Paraformaldehyde (PFA) to fix the cells for 15 min at room temperature. Then the cells were washed with PBS, permeabilized with 0.1% Triton X-100, and blocked with PBS buffer which were containing 3% BSA. Then we used the anti-ASC (Adipogen AL177, 1:200 at 4°C overnight) to incubate with the cells and used DyLight 488-labeled as the secondary antibody (1:50 at room temperature for 45 min). Finally, DAPI was used to stain nuclei and cells were visualized by fluorescence microscope (Nikon Ti2-U).
+ Open protocol
+ Expand
4

Visualizing BMDM Inflammasome Assembly

Check if the same lab product or an alternative is used in the 5 most similar protocols
BMDMs seeded on four-well chamber slides were primed and pre-treated for 30 min with or without inhibitors before transfection with poly(dA:dT) (1 μg/mL) for 2 h. The slides were transferred to 4% paraformaldehyde for 20 min on ice and permeabilized with 100% acetone for 10 min at −20 °C. The dried slides were rehydrated with PBS and blocked with 10% horse serum for 1 h. The cells were stained with anti-ASC antibodies (AL177, Adipogen, San Diego, CA, USA) and Cy3-conjugated anti-rabbit antibodies. Nuclei were stained with DAPI, and fluorescence microscopy (AX10, Zeiss, Oberkochen, Germany) images were obtained.
+ Open protocol
+ Expand
5

Inflammasome Activation Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
The presence of active caspase-1 and ASC oligomers were assessed by Western blot using the anti-caspase-1 sc-515 antibody (Santa Cruz Biotechnology, Dallas, TX, USA), which detects the fragments of the active caspase-1 (10 kDa, p10) and the inactive uncleaved caspase-1 precursor (45 kDa, p45), or the anti-ASC antibody AL177 (Adipogen, Liestal, Switzerland), which identifies ASC monomers (22 kDa) and oligomers when using native gels as detailed in the supplementary methods.
+ Open protocol
+ Expand
6

Fluorescent Imaging of Macrophage Autophagy and Secretion

Check if the same lab product or an alternative is used in the 5 most similar protocols
BMMs (1 × 105) were seeded in eight-well chamber slides (Thermo Fisher Scientific). After the treatment with different stimuli, cells were fixed with 4% paraformaldehyde and then permeabilized with 0.5% Triton X-100 for 15 min, followed by blocking with 1% bovine serum albumin and 0.1% Triton X-100 in phosphate-buffered saline (PBS) at 37 °C for 1 h. The samples were incubated with anti-ASC antibody (AL177, Adipogen), anti-ALIX antibody (634501, Biolegend), anti-CHMP4B antibody (13683-1-AP, Proteintech), and anti-LAMP1 antibody (1D4B, Developmental Studies Hybridoma Bank) in the blocking buffer overnight at 4 °C, followed by the incubation with Alexa Fluor 647 goat anti-rabbit antibody (A-21244, Thermo Fisher Scientific), Alexa Fluor 488 goat anti-rabbit antibody (A-11008, Thermo Fisher Scientific), or Alexa Fluor 568 goat anti-rat antibody (A-11077, Thermo Fisher Scientific) for 2 h at room temperature. Nuclei were stained with DAPI (H-1200, Vector Laboratories). To evaluate LAP formation, BMMs, generated from GFP-LC3 transgenic mice, were incubated with zymosan at a ratio of 8:1 (particle/cell), then GFP-LC3 puncta were detected. Images were acquired using a laser scanning confocal fluorescence microscope with a 60× objective (Olympus Fluoview FV3000).
+ Open protocol
+ Expand
7

In-Depth Analysis of ASC Oligomerization

Check if the same lab product or an alternative is used in the 5 most similar protocols
A total of 107 BMDMs were used per well, primed with 100 ng/ml of ultrapure LPS (InvivoGen, tlrl-peklps) for 4 h and then infected with L. amazonensis for 24 h. BMDMs were resuspended in a hypotonic solution (10 mM Hepes – pH 7.9, 1.5 mM MgCl2, 10 mM KCl, 0.2 mM PMSF, 0.5 mM DTT, protease inhibitor cocktail Roche), incubated on ice for 15 min, homogenized (Kontes 22 mm) and centrifuged for 8 min at 10,000×g. The pellets were resuspended in 500 µl of CHAPs buffer (20 mM HEPES-KOH – pH 7.5, 5 mM MgCl2, 0.5 mM EGTA, 0.1% CHAPs, 0.1 mM PMSF, and protease inhibitor cocktail from Roche) and centrifuged for 8 min at 10,000×g. Finally, the pellets were resuspended in 200 µl of CHAPs buffer, 4 µl of a 100 mM DSS stock solution to a final concentration of 2 mM, and incubated for 30 min in the dark. The oligomers were resolved on a 12% SDS-PAGE and visualized by immunoblotting with an anti-ASC antibody (Adipogen AL177, 1:1000).
+ Open protocol
+ Expand
8

Visualizing Inflammasome Activation in Macrophages

Check if the same lab product or an alternative is used in the 5 most similar protocols
HoxB8‐differentiated macrophages were treated for 12 h with LPS with or without GM‐CSF and with LPS+Nigericin for the last 1 h in an 8‐well Ibidi chamber. Next, cells were fixed using 4%PFA and permeabilized with 0.2% Triton‐X. After 30 min Fc block, cells were stained with anti‐ASC antibody (AL177, AdipoGen) for 1 h, followed by an anti‐rabbit secondary ab. Last, 0.2 µg/ml DAPI was added to the cells for 10 min. Stained cells were imaged for ASC Speck structure using a confocal LSM 880 microscope equipped with a 63x oil objective keeping the laser settings of images constant for comparison.
+ Open protocol
+ Expand
9

Visualizing Inflammasome Activation via ASC Specks

Check if the same lab product or an alternative is used in the 5 most similar protocols
To visualize inflammasome activation, ASC-speck formation was detected by immunological staining of ASC. 3 × 105 monocytes were seeded in 96-well cell imaging plates (MoBiTec) and stimulated for 8 h prior fixation with 4% paraformaldehyde (PFA, Merck) for 20 min at room temperature. After washing with PBS, unspecific antibody binding was blocked with PBS/50% human AB-serum for 30 min. Subsequently, anti-ASC antibody (1:500 in PBS/10% AB-serum, polyclonal rabbit anti-ASC (AL177, AdipoGen Life Science)) was incubated for 30 min followed by washing with PBS and anti-rabbit-AlexaFluor488 (1:100, Biolegend) incubation for 30 min. After washing with PBS, cells were imaged with a fluorescence microscope (Zeiss Axio Observer.Z1/AxioCamMRm3) and processed with Zeiss ZEN 2 software.
+ Open protocol
+ Expand
10

Comprehensive Inflammasome Signaling Pathway Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used targeted mouse IL-1β (AF-401-NA, R&D Systems), mouse gasdermin D (ab209845, Abcam), ASC (AL177, Adipogen), mouse IL-1α (AF-400-NA, R&D Systems), human calpain 1 (ab39170, Abcam), human calpain 2 (ab39165, Abcam), and β-actin-HRP (A3854, Sigma). Pharmacological agents used were punicalagin (Sigma), glycine (Sigma), NBC6 (synthesized in house (17 (link))), MCC950 (CP-456773, Sigma), Z-VAD-fluoromethyl ketone (Merck), calpain inhibitor III (Merck), nigericin (Sigma), adenosine triphosphate (Sigma), ionomycin (Sigma), monosodium urate crystals (InVivoGen), calcium pyrophosphate dihydrate crystals (InVivoGen), and IL-Ra (Kineret®, Amgen). All other materials were from Sigma-Aldrich unless specified.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!