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14 protocols using usb2000 fiber optic spectrometer

1

Optical Characterization of Protein-Bound Dyes

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Example 4

After purification to homogeneity, optical properties of the dyes can be measured in 100% calf serum. Absorbance spectrometry (200 to 870 nm) can be performed using a USB2000 fiber optic spectrometer and CHEM2000-UV-VIS light source with cuvette holder (Ocean Optics, Dunedin, Fla.). Fluorescence spectrometry (200 to 1100 nm) can be performed using a HR2000 fiber optic spectrometer, CUV-ALL-UV 4-way cuvette holder (Ocean Optics), and a 250 mW 770 nm laser diode (Electro Optical Components, Santa Rosa, Calif.). Quantum yield can be measured under conditions of matched absorbance and 770 nm laser excitation, using ICG in DMSO (QY=13%) as the calibration standard.

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2

Photocatalytic Degradation of Methylene Blue

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Photocatalytic activities of samples were evaluated by the degradation of methylene blue (MB) solution under simulated sunlight. A 500 W Xe lamp (UXL-16B, Ushio, Tokyo, Japan) was used as a light source, with a maximum intensity of 494 nm. The spectrum of incident light was obtained by USB 2000 fiber optic spectrometer (Ocean Optics, Dunedin, FL, USA). The reactor was set 20 cm away from the output beam. In a typical experiment, 0.1 g of the sample was added into 100 mL of 10 mg·L−1 MB solution.
Prior to photocatalytic testing, the solution was stirred for 30 min in darkness to reach the adsorption-desorption equilibrium of MB to avoid any error from the initial adsorption effect, then irradiated with stirring. At different irradiation time intervals, solutions were taken from the reaction suspension, filtered through a 0.45 µm Millipore filter to remove the particles, and then analyzed for MB content using a UV-Vis-NIR spectrophotometer (V-670, Jasco, Oklahoma City, OK, USA) at 664 nm. The rate of degradation was calculated by assuming pseudo-first-order kinetics and, hence, the rate constant for the degradation, k, was obtained from the first-order plot, according to the following equation: ln(C/C0) = kt, where C0 is the initial absorbance of MB, C is the absorbance of MB after a time (t), and k is the first-order rate constant.
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3

Analytical Techniques for Complex Samples

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The following instruments were used for spectroscopic analyses:
USB-2000 fiber optic spectrometer (Ocean Optics, Inc.) with DT-Mini-B lamp source for UV-visible absorbance spectroscopy, Agilent 1260 and 1050 systems with attached vacuum degasser, auto-autosampler and diode array detector for chromatography, ABI-Q-Trap 3200 for mass spectrometry, and Varian Inova 400 MHz NMR.
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4

Photophysical Characterization of Microbe-Semiconductor Hybrids

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The stationary photoluminescence of the microbe-semiconductor hybrids was characterized at room temperature by a USB2000 Fiber Optic Spectrometer from Ocean Optics (excitation: 450 nm). Additional absorbance spectra were recorded using a Cary 60 UV-Vis spectrophotometer. Sample solutions were vortexed then transferred into disposable cuvettes for all the photophysical measurements. Microbe-semiconductor hybrids and other relevant samples were prepared following the aforementioned protocols and their stationary photoluminescence was measured at 0, 0.25, 0.5, 0.75, 1.25, 2.25, 3.25, 5.25, and 7.75 hr after assembly. Additional samples were prepared and tested for the Stern-Volmer analysis. When Stern-Volmer analysis was conducted to evaluate the effect of cysteine as a QD quencher, samples with cysteine concentrations of 1, 0.5, 0.25, 0.1, 0.05, 0.025, 0.01, and 0.005 equivalents were tested. When Stern-Volmer analysis was conducted to evaluate the effect of microbes as a QD quencher under different conditions, samples with X. autotrophicus concentrations of 1.5, 1.25, 1, 0.75, 0.5, 0.45, 0.4, 0.35, 0.3, 0.25, 0.2, 0.15, 0.1, 0.05, 0.025, and 0.005 equivalents were tested.
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5

Characterization of AgMOF-based Nanomaterials

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A UV-Vis spectrophotometer (Shimadzu, Kyoto, Japan) was used to record the UV-Vis spectra of the AgMOFS-CDs and AgMOFN-CDs. The spectra of the hybrid materials were recorded from 200 to 1200 nm with H2O/DMSO (4: 1, v/v) as a blank. The potential presence of a photothermal effect was examined by type K thermometer Testo 925 (Testo, West Chester, PA, USA), whose flexible immersion tip has been carefully plunged into a corresponding well filled with seeded cells and DMEM supplemented with FBS. Experiments were performed in the dark at constant room temperature. The emission spectra of saline solution, AgMOFS-CDs, and AgMOFN-CDs have been taken by USB 2000+ fiber optic spectrometer (Ocean Optics, Dunedin, FL, USA).
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6

UV-Vis Spectroscopy Protocol

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UV-Vis spectroscopy was performed using a Mikropack DH-2000 UV-Vis-NIR Halogen light source and an OceanOptics USB2000 Fiber Optic Spectrometer. Spectra from 375 nm to 750 nm were recorded at 150 ms integration time and time intervals of 60 s.
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7

Spectroscopic Analysis of Muscle Fibers

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Each individual 1-min IVVM recording was followed by a spectrometer recording of the same field of view. A USB2000 Fiber Optic Spectrometer (Ocean Optics Inc, Dunedin, FL, USA) was attached through a fiber optic C-Mount-MIC eyepiece adaptor for SMA 905 Fibers (Ocean Optics Inc, Dunedin, FL, USA) mounted on the microscope. Using the OOIBase32 software (Ocean Optics Inc, Dunedin, FL, USA), transilluminated light (λ ranging from 450 to 650 nm) from the exposed EDL was collected for 2 min with the spectrometer (10–11 recordings/sec). This generated approximately 1200 individual light intensity profiles for each λ within this range.
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8

Electrochemical Cell Spectroscopy Setup

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The spectrometer used was a USB 2000 Fiber Optic Spectrometer (Ocean Optics). The light source that was a DH-2000-BAL deuterium-halogen (Ocean Optics) was guided through the optical fiber of 600 μm in diameter (Ocean Optics, USA). The light beam was collimated using optical lenses (Thorlabs; focal length, 2 cm) before and after the transmission of the beam through the electrochemical cell. The light beam passed through the electrochemical cell slightly above the water-TFT interface, i.e., through the aqueous phase. The interfacial Galvani potential difference ( Δowϕ ) was controlled using an Autolab PGSTAT204 potentiostat (Metrohm, Switzerland).
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9

Absolute Irradiance Measurement of LED

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Absolute irradiance measurements were performed on a USB-2000 fiber optic spectrometer (Ocean Optics, Inc.) attached to a CC-3-UV-S cosine corrector (Ocean Optics, Inc.). In Spectrasuite software, absolute irradiance of 406 nm LED was recorded by shining the LED by positioning it in line with the cosine corrector at varying distances. Absolute irradiance values were plotted against inverse distance squared values.
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10

Multimodal Characterization of Nanomaterials

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A JEOL 2200FS HRTEM operated at 200 kV, was used to obtain the STEM images. A Cary 50 UV-Vis Spectrophotometer from Agilent Technologies and a JASCO J-815 CD spectropolarimeter were used for UV-Vis spectrum and CD spectrum characterizations, respectively. The XRD data were measured with a Bruker D8 with IµS-XR Source. The zeta potential and titration were conducted with a Malvern Zetasizer Nano ZSP equipped with an Autotitrator. FTIR spectra were measured with a Cary 630 FTIR Spectrometer from Agilent. XPS data were measured by ESCALAB Xi+ X-ray Photoelectron Spectrometer from ThermoFisher Scientific. Solid-state NMR spectra were recorded by a JNM-ECZ600R from JEOL.
UV-titration was conducted by coupling the titration experiments with an Ocean optics USB2000 fiber optic spectrometer. Titration experiments were performed using a commercial, computer-controlled system from Metrohm (Filderstadt, Germany), operated with the custom-designed software Tiamo (v2.2). The setup consists of a titration device (Titrando 809) that regulates two dosing units (Dosino 807) capable of dispensing titrant solution in steps as small as 0.2 µL.
CD titration was conducted by manual addition of concentrated KOH solutions into the cuvettes followed by the measurement of the CD spectrum. The pH was recorded by a Mettler Toledo pH meter. All the pH electrodes were calibrated before use.
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