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20 protocols using anti human cd4 microbeads

1

Isolation and Enrichment of CD4+ T Cells

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PBMCs were isolated from apheresis packs using Ficoll-Paque Plus (GE Healthcare, Piscataway, NJ, USA) density gradient. CD4+ T cells were obtained by positive selection using anti-human CD4 microbeads (Miltenyi Biotec, Auburn, CA, USA). Cells were kept overnight at 4 °C.
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2

PBMC Isolation and CD4+ T Cell Purification

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Peripheral blood mononuclear cells (PBMC) were isolated from heparinized blood using Ficoll-Paque Plus (GE Healthcare, Piscataway, NJ, USA) density gradient centrifugation as described previously [49 (link)]. CD4+ T cells were obtained by positive selection using anti-human CD4 microbeads (Miltenyi Biotec Auburn, CA, USA).
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3

Isolation and RNA Extraction of CD4+ T Cells

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PBMCs were isolated from apheresis packs using Ficoll-Paque Plus (GE Healthcare, Piscataway, NJ, USA) density gradient. CD4+ T cells were obtained by positive selection using anti-human CD4 microbeads (Miltenyi Biotec Auburn, CA, USA) [29 (link)]. CD4+ T cells in RPMI 1640+1% P/S/G+10% FBS medium were incubated for 4 hours at 37ºC (5% CO2 incubator). CD4+ T cells were then washed and collected by centrifugation. Cell pellets were then lysed in 350 μl RLT buffer (QIAGEN Inc, Valencia, CA, USA) for total RNA extraction [29 (link), 30 (link)].
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4

Naïve CD4+ T-cell Differentiation Assay

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CD4 naïve (CD4+CD45RO) T-cells were purified by negative selection with anti-human CD45RO microbeads followed by positive selection with anti-human CD4 microbeads (Miltenyi Biotec, Auburn, CA). Subset purity monitored by FACS routinely exceeded 95%. CD4+CD45RO T-cells (1.0×105/well) were stimulated with CD3/CD28-coated beads (Life Technologies AS, Oslo, Norway, ratio 1:1) and cultured for 7 d in previously described cytokine cocktails to induce T-cell lineage commitment (41 (link)). Intracellular IFN-γ, IL-4, IL-17 and FoxP3 were measured by flow cytometry after incubation with PMA/ionomycin in the presence of Brefeldin A for 6h as described (42 ). For cell proliferation assays, naïve CD4 T-cells were CFSE labeled and stimulated with anti-CD3/CD28 beads with or without KU-55933, 6-AN or Tempol (50 μM). T-cell subpopulations were analyzed by surface staining for CD45RA and CD62L. For oxidative stress experiments, cells were stimulated (72 h), pretreated with the ATM inhibitor KU-55933 (30min) and incubated with increasing doses of H2O2 or menadione (3μM, 30min).
Ten million CD45RO PBMCs were CFSE labeled and adoptively transferred into irradiated (10.0 Gy) NSG mice by intravenous injection. Spleens were collected on days 5, 7, 9 and 14 after transfer and analyzed by flow cytometry.
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5

PBMC Isolation and RNA Extraction

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Blood was collected from VL patients and ECs into BD Vacutainer® Lithium HeparinN (LH) 170 I.U. Plus Blood Collection Tubes (BD Biosciences). Blood was layered over Lymphoprep (StemCell Technologies, Inc.) to isolate PBMCs. CD4+ T cells were isolated from PBMCs by magnetic-activated cell sorting (MACS) using MS Columns and anti-human CD4 MicroBeads (both by Miltenyi Biotec, Bergisch Gladback, Germany) into RNAlater (Invitrogen, Carlsbad, CA). Cells were homogenized using the QIAshredder and RNA isolated using the RNeasy Mini Kit (both by QIAGEN, Hilden, Germany) according to manufacturer’s instructions. DNA digestion was performed using either the RNAase-free DNase set or DNase Max kit (both by QIAGEN). RNA was quantified using the Qubit RNA HS Assay kit on a Qubit 4 Fluorometer (Thermo Fisher, Waltham, MA). The quality of RNA was determined using the RNA 6000 Nano kit, run on a 2100 Bioanalyzer (both by Agilent Technologies, Santa Clara, CA) according to the manufacturer’s instructions where an RNA Integrity Number (RIN) value of above 8 was optimal.
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6

Isolating and Analyzing CD4+ T Cells from HLA-B27+ SpA Patients

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Peripheral blood mononuclear cells (PBMC) were isolated from healthy controls and HLA-B27+ SpA patients (all fulfilling Assessment of SpondyloArthritis international Society classification criteria for axial SpA (27 (link))) by Ficoll (GE Healthcare) density gradient centrifugation. The characteristics of patients and controls (unmatched for age) are shown in Supplementary Table SII). Patients were considered as resistant to conventional treatment if they had a Bath Ankylosing Spondylitis disease activity score > 3/10 despite non-steroidal anti-inflammatory drug and biotherapy usage. CD14+ cells were first removed from PBMC by positive magnetic selection, using anti-human CD14 microbeads and AutoMacs Pro Separator (Miltenyi). Then, CD4+ T cells were magnetically sorted from the CD14- fraction using anti-human CD4 microbeads and AutoMacs Pro Separator (Miltenyi) and cultured during 6 days with rhIL-2 (10 ng/mL), soluble anti-CD28 (2 µg/mL) and coated-anti-CD3 (10 µg/mL) in the presence or absence of rhIL-27 (40 ng/mL) in complete medium. At day 6, supernatants were harvested for measure of cytokine levels by ELISA and cells were stimulated with PMA (10ng/mL), ionomycin (1µg/mL) and BFA (2µg/mL) for 6 hours for intracellular cytokine staining.
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7

CIK Cell-Mediated Cytotoxicity Assay

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CIK cells were obtained from ex vivo expansion of PBMC for 14 days. CD4-CIK and CD4+ T cells were isolated using anti-human CD4 microbeads (Miltenyi Biotec, Germany) and co-cultured with A549, H520, or K562 cells for 4 h. Cytotoxicity assays were performed by measuring the optical density (OD) value from the release of lactate dehydrogenase (LDH) in the culture supernatant through the specific lysis of target cells.
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8

Activation of Naive CD4+ T Cells

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Human PBMCs were obtained as above, and CD4+ T cells enriched using anti-human-CD4 microbeads (Miltenyi Biotec) before sorting naive CD4+ CD45RA+ CD25T cells by flow cytometry using an Influx II cell sorter (BD Bioscience, San Diego, CA, USA). Naive T cells were co-cultured with allogenic moDC in StemXvivo (R&D Systems) serum-free medium in roundbottom plates containing interleukin-2 (10 ng ml−1, Biolegend) and anti-CD3 antibody (clone OKT3, 0.2 µg ml−1, Biolegend). In all, 5 × 103 DCs were plated per 1 × 105 T cells in the presence of either 100 µg ml−1 anti-TGFβ (1D11), 20 µg ml−1 anti-integrin β8 (clone 37e1B5,38 100 µg ml−1 isotype control IgG (MOPC-21), or 5 ng ml−1 active TGFβ (Peprotech).
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9

Activation of Naive CD4+ T Cells

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Human PBMCs were obtained as above, and CD4+ T cells enriched using anti-human-CD4 microbeads (Miltenyi Biotec) before sorting naive CD4+ CD45RA+ CD25T cells by flow cytometry using an Influx II cell sorter (BD Bioscience, San Diego, CA, USA). Naive T cells were co-cultured with allogenic moDC in StemXvivo (R&D Systems) serum-free medium in roundbottom plates containing interleukin-2 (10 ng ml−1, Biolegend) and anti-CD3 antibody (clone OKT3, 0.2 µg ml−1, Biolegend). In all, 5 × 103 DCs were plated per 1 × 105 T cells in the presence of either 100 µg ml−1 anti-TGFβ (1D11), 20 µg ml−1 anti-integrin β8 (clone 37e1B5,38 100 µg ml−1 isotype control IgG (MOPC-21), or 5 ng ml−1 active TGFβ (Peprotech).
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10

Differentiation and Activation of T-Cells

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A 2‐h adhesion step was used to separate monocytes from peripheral blood mononuclear cells (PBMCs) at 37°C. Adherent monocytes were treated with a combination of IL‐4 (PeproTech, AF‐200‐04‐20, 20 ng/mL) and granulocyte‐macrophage colony stimulating factor (GM‐CSF) (PeproTech, AF‐300‐03‐20, 20 ng/mL) after nonadherent cells were removed. The cultures were incubated in 1640 medium (HyClone) supplemented with 10% fetal bovine serum. Every 48 h, half‐volume adjustments were made, and fresh 20 ng/mL IL‐4 and 20 ng/mL GM‐CSF supplements were added; the cells were cultured for 7 days to obtain DCs. Afterward, the cell purity was determined by flow cytometry; additionally, the isotype control served as the adverse control.
PBMCs were collected using density gradient centrifugation, as previously described, and CD4+ T‐cells were subsequently purified using antihuman CD4 MicroBeads on a magnetic activated cell sorting (MACS) magnetic rack (Miltenyi Biotec). Purified CD4+ T‐cells were resuspended in 1640 medium (HyClone) containing 10% fetal bovine serum (Gibco) at a concentration of 1 × 106/mL. Pure mouse antihuman CD3 antibody (BD Pharmingen, 553057, 10 μg/mL) and purified mouse antihuman CD28 antibody (BD Pharmingen, 553294, 5 μg/mL) were added to the mixture to activate CD4+ T‐cells.
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