The largest database of trusted experimental protocols

13 protocols using rtespa probe

1

Dendrimer Assembly Characterization by DLS and AFM

Check if the same lab product or an alternative is used in the 5 most similar protocols
A dendrimer solution (10 mg/mL, 100 µL) in absolute ethanol was injected into ultrapure water (1.9 mL) and vortex mixed for 5 s, to obtain a final dendrimer concentration of 0.5 mg/mL. The size, PDI, and ζ-potential of the assemblies were determined by triplicate (independent samples from each treatment) at 23 °C, using dynamic light scattering (DLS) with a Malvern Zetasizer ZS ZEN3600 (Malvern Instruments Ltd., Malvern, UK) following the procedure described by Percec et al. [3 (link)]. Morphology of the assemblies was evaluated using atomic force microscopy (AFM). For this analysis, samples obtained from ethanol injection experiments were diluted 1:2 with ultrapure water. 10 μL of the sample were placed on a glass coverslip and then allowed to air dry for approximately 15 h. Samples were observed in a NT-MDT NTEGRA Prima AFM (Moscow, Russia) at 23 °C, with a RTESPA probe (Bruker, Billerica, MA, USA) of spring constant k = 40 N/m in semicontact mode. Height and phase images were simultaneously obtained with a scan rate of 1.61 μm/s over a selected area of 1 × 1 μm. Images were processed and analyzed using NOVA 3.1. (NT-MDT). The height and diameter of assemblies were measured from the profile section of AFM line scans analyzing height images
+ Open protocol
+ Expand
2

Atomic Force Microscopy of Bdellovibrio

Check if the same lab product or an alternative is used in the 5 most similar protocols
The lysate was observed using Olympus U‐TVO.35XC‐2 light microscope (T2 Tokyo, Japan) for characteristic high motility of Bdellovibrio strains. The atomic force microscopy study (AFM) was done at the Department of Cellular Biology and Genetics (UANL). Briefly, 10 μL of lysate from prey and Bdellovibrio strains cocultured in HEPES buffer was deposited on cleaved mica and allowed to air‐dry. The bacteria samples were observed using an NT‐MDT NTEGRA Prima AFM at room temperature, with a RTESPA probe (Bruker corporation, Beijing China) of spring constant k = 40 N/m in intermittent contact mode. Images of height, deflection, and phase were obtained; 20 × 20, 10 × 10, and 5 × 5 μm2 image sizes were captured systematically for each sample at three different regions at least. They were analyzed with WSXM software to observe the morphological aspect of the bacteria (Nunez et al. 2003; Horcas et al. 2007).
+ Open protocol
+ Expand
3

Atomic Force Microscopy of Exosomes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Exosomes were isolated from a pool from different batches of lyophilized ICRP employing the kit Exoquick (Invitrogen, Waltham, MA, USA) that separates extracellular vesicles through ultracentrifugation. After that, the pellet was resuspended in sterile PBS 1X and analyzed with atomic force microscopy. The samples were observed using an NT-MDT Spectrum, NTEGRA Prima AFM at room temperature, with an RTESPA probe (Bruker, Billerica, MA, USA) of spring constant k = 40 N/m in intermittent contact mode. Images of height, deflection, and phase were obtained; 20 × 20, 10 × 10 and 5 × 5 µm2 image sizes were captured systematically for each sample at three different regions at least. The samples were analyzed with Gwyddion version 1.6 software to observe the morphological aspect of the exosome [16 (link)].
+ Open protocol
+ Expand
4

Comprehensive Characterization of Textile Composites

Check if the same lab product or an alternative is used in the 5 most similar protocols
An elemental analysis to quantify the nitrogen incorporated into the composites was conducted on a CHN/O Perkin Elmer 2400 Series II (Shelton, CT, USA).
Fourier transformed infrared analysis (FT-IR) of the composites, as well as of the cotton textiles, was conducted on a Nicolet iS10 (Waltham, MA, USA) with an attenuated total reflectance (ATR) accessory with a diamond tip. Each sample was scanned 64 times at a wavelength of 4000–400 nm.
Tensile testing was carried out on a MTS TestSuite TWElite (Eden Prairie, MN, USA) at a speed of 4.23 mm/s; composites and cotton textiles were cut into strips of 100 ± 1.5 × 15.09 ± 1.24 mm with an average thickness of 0.4 ± 0.25 mm, and samples were tested by triplicate to obtain the average value.
The composites and cotton textiles were observed using a scanning electron microscope Nova NanoSEM200 (FEI, Hillsboro, OR, USA) at low vacuum, using a low vacuum detector (LV), and a NT-MDT NTEGRA Prima AFM at room temperature, with a RTESPA probe (Bruker, Mexico City, Mexico) of spring constant k = 40 N/m in intermittent contact mode. Images of height, deflection, and phase were obtained; 100 × 100 and 20 × 20 µm2 image sizes were captured systematically for each sample in the three different regions. They were analyzed with Nova 3.1 to obtain the average roughness and morphological aspect of the composites.
+ Open protocol
+ Expand
5

Nanoscale Characterization of Polymer Composites

Check if the same lab product or an alternative is used in the 5 most similar protocols
Energy-dispersive X-ray spectroscopy (EDX) was used to analyze the chemical composition of different sections of the samples. The samples were directly deposited on carbon tape sections fixed on aluminum supports, and no gold coating was applied in order to avoid any interferences between sulfur and gold.
The Atomic Force Microscopy (AFM) images were obtained using a Bruker Dimension Icon microscope. A thin slice of the sample was mounted onto a metallic disc glued with double-sided tape, and, for the electrical measurements, a thin layer of silver paint was used to connect the sample surface to the metallic disc and the microscope stage. Given the fact that Young’s moduli of PEDOT:PSS and PLGA are of the order of a few GPa [43 (link),44 (link)], for the nanomechanical measurements performed using the Quantitative Nanomechanics kit from Bruker, a Bruker RTESPA probe (nominal spring constant, k = 40 N/m, tip radius 8 nm) was selected since it is the one recommended for Young’s modulus ranging from 0.2 to 8.1 GPa. On the other hand, to obtain the surface potential maps by means of Kelvin Probe Force Microscopy (KPFM), a Bruker PFQNE-AL probe was used (k = 0.8 N/m, tip radius 5 nm). In this case, the work function of the tip was measured by using a gold/aluminum calibration sample (Bruker PFKPFM-SMPL) since the work function of gold can be averaged to 5.38 eV [45 ].
+ Open protocol
+ Expand
6

AFM Characterization of Tumor Exosomes

Check if the same lab product or an alternative is used in the 5 most similar protocols
The exosomes isolated from the serum of BC patients were observed using an NT-MDT NTEGRA Prima AFM at room temperature, with a RTESPA probe (Bruker) of spring constant k = 40 N/m in intermittent contact mode. Images of height, deflection, and phase were obtained; images of 20 × 20, 10 × 10, and 5 × 5 μm2 were captured systematically for each sample in at least three different regions. They were analyzed with WSXM software to observe the morphological aspect of exosomes [27 (link)].
+ Open protocol
+ Expand
7

Quantitative Nanomechanical Mapping of Cancer Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The surface of the control cancer cells and the Venetin-1-treated cells was analyzed by AFM. Measurements were performed using a NanoScope V AFM microscope operated in the PeakForce Quantitative Nanomechanical Mapping mode with MultiMode 8 (Bruker, Veeco Instruments Inc.). It was equipped with NanoScope 8.15 software. The local modulus of elasticity was determined using the Derjaguin-Muller-Toporov (DMT) modulus. The nominal spring rate of the RTESPA probe (Bruker, USA) (silicone tip on a nitride lever) was 40 N/m. Young’s modulus was determined for a selected area of the A549 cell surface. The samples were prepared as described for SEM. Young’s modulus was determined for 20 fields in each sample (dark areas of low rigidity and bright areas of high rigidity). The data were analyzed statistically.
+ Open protocol
+ Expand
8

Fungal Cell Surface Nanomechanics Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The surface of both the control and AAF-treated fungal cells was measured using NanoScope V AFM (atomic force microscope) in the Peak-Force Quantitative Nanomechanical Mapping Mode (Bruker, Vecco Instruments Inc., Billerica, MA, USA) and NanoScope 8.15 software. The nominal spring constant of the RTESPA probe (Bruker, Billerica, MA, USA) (silicone tip on the nitride lever) was 40 N/m.
+ Open protocol
+ Expand
9

Algal Cell Surface Characterization by AFM

Check if the same lab product or an alternative is used in the 5 most similar protocols
Algal cells prepared as for the SEM analysis (as above) in 100% acetone were placed on a mica disc and analyzed using atomic force microscopy (AFM). The cell surface was characterized using a NanoScope V AFM (Bruker, Vecco Instruments Inc., Billerica, MA, USA) in the Peak-Force Quantitative Nanomechanical Mapping Mode and NanoScope 8.15 software. The nominal spring rate of the RTESPA probe (Bruker, Billerica, MA, USA) (silicone tip on nitride lever) was 40 N/m.
+ Open protocol
+ Expand
10

Atomic Force Microscopy Protocol for Collagen Morphology

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following AFMindentation, the polished surface was partially decalcified by soaking the bones in 0.5 M EDTA for 25 minutes followed by five minutes of sonication in a water bath. This process was repeated five times for each sample. For imaging, RTESPA probes were used (Bruker; radius nominally 8 nm, spring constant  = 40 N/m). The scan size was set at 3.5 µm with 512×512 pixels and a scan rate of 0.5 lines/s. For measurements of collagen morphology, four locations were imaged per sample, and 10 to 15 fibrils were measured at each location. 40 to 50 fibrils per sample were averaged to produce a single value for each animal, though the individual tests were used for distribution comparisons. Using SPIP 5.1.10 (Image Metrology, H∅rsholm, Denmark),D-periodic spacing was calculated using2D Fast Fourier Transformations (2D FFTs) as previously described [28] (link).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!