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18 protocols using ethyl acetate

1

Synthesis and Analysis of Neuroprostanes and F2t-dihomo-Isoprostanes

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Three NeuroPs (4(RS)-4F4t-NeuroP, 4-epi-4-F3t-NeuroP, 4-F4t-NeuroP) and three F2t-dihomo-IsoPss (17-epi-17-F2t-dihomo-IsoP, 17-F2t-dihomo-IsoP, Ent-7(RS)-7F2t-dihomo-IsoP) were synthesized by Durand’s team at the Institut des Biomolecules Max Mosseron (IBMM) (Montpellier, France). Table 1 shows the different NeuroPs and F2t-dihomo-IsPs molecules tested in this study.
The enzyme β-glucuronidase, type H2 from Helix pomatia and BIS-TRIS (bis-(2hydroxyethyl)-amino-tris(hydroxymethyl)-tris(hydroxymethyl)-methane) were obtained from Sigma-Aldrich (St Louis, MO, USA). All LC-MS-grade solvents were obtained from J.T. Baker (Phillipsburg, NJ, USA). Hydrochloric acid, hexane, trichloroacetic acid, and ethyl acetate were obtained from Panreac (Caste3llar del Vallés, Barcelona, Spain). Strata X-AW solid-phase extraction (SPE) cartridges, 100 mg per 3 mL, were purchased from Phenomenex (Torrance, CA, USA). Water was treated in a Milli-Q water purification system from Millipore (Bedford, MA, USA).
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2

Synthesis and Characterization of N-Containing Compounds

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L-cysteine, γ-benzyl-L-glutamate ((Bzl)Glu), ɛ-Z-L-lysine ((Z)Lys), L-leucine (Leu), triphosgene, α-pinene, trifluoromethanesulfonic acid (TFMSA), trifluoroacetic acid (TFA), 2-(p-tolyl)-pyridine (NCtpy) and other reagents were purchased from Sigma–Aldrich (Germany) and used as received. 1,4-Dioxane, n-hexane were purchased from Vecton Ltd. (Russia) and distilled prior to use. Dimethyl sulfoxide (DMSO), also purchased from Vecton Ltd. (Russia), was dried under molecular sieves 4 Ǻ and distilled under vacuum. Ethyl acetate purchased from Panreac (Spain) was distilled before application. All solvents were purified and distilled using standard procedures.
HEK 293 (human embryonic kidney cells), HELF (human embryonic lung fibroblasts) and U937 (human lymphoblast lung cells) cell lines were purchased from BioloT (Russia). The cells were cultured in Dulbecco’s Modified Eagle Medium (BioloT, Russia) and grown in Dulbecco’s Modified Eagle’s Medium containing 10% (v/v) heat-inactivated fetal bovine serum (FBS, HyClone Laboratories, UT, USA), 1% L-glutamine, 1% sodium pyruvate, 50 U/mL penicillin and 50 μg/mL streptomycin (BioloT).
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3

Characterization of Coffee Pulp Bioactive Compounds

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In this study, Comercializadora Tint Café S.A.S, Villeta, Colombia, supplied coffee pulp samples of both colors (red and yellow). β-Carotene of 97.0% (w/w) purity was used from Sigma-Aldrich (product number 7235-40-7). The chemicals 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2′-Azinobis (3-ethylbenzothiazoline-6-sulphonic acid) diammonium salt (ABTS), and anhydrous caffeine (C8H10N4O2), were also used from Sigma-Aldrich. Absolute ethanol (C2H5OH, 99.8% v/v), ethyl acetate (C4H8O2, 99.5% v/v), acetone (C3H6O, 99.5% v/v), hydrochloric acid (HCl, 37.0% v/v), and sodium hydroxide (NaOH, 98.0% w/w) were obtained from Panreac (Gmbh). For the determination of total dietary fiber (TDF), insoluble dietary fiber (IDF), and soluble dietary fiber (SDF) heat-stable α-amylase, protease, and amyloglycosidase (Sigma® Life Science) were utilized for enzymatic digestion. Anhydrous disodium hydrogen phosphate (Na2HPO4, 99.0% w/w) and anhydrous sodium dihydrogen phosphate (NaH2PO4, 99.0% w/w) from Panreac were used for preparing the phosphate buffer in TDF, IDF, and SDF quantification. For the extract dilution a Don Olio (Colombia) sunflower oil was used. As wall materials, arabic gum from CIACOMEQ S.A.S. and maltodextrin from Cimpa S.A.S. were used.
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4

Quantification of Lipid Mediators

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AAPH (2,2′-Azobis [2-methylpropionamidine] dihydrochloride), adrenic acid (AdA, 22:4 n-6), β-glucuronidase type IX-A from E. coli, and potassium hydroxide (KOH) were purchased from Sigma Aldrich Química S.A. (Madrid, Spain). Methanol (MeOH), ethanol (EtOH), n-heptane (C7H16), and acetonitrile (CH3CN) at LC-MS grade were purchased from J.T. Baker (Phillipsburg, NJ, USA). Formic acid (98% w/w) and ethyl acetate (analytical grade) were from Panreac (Barcelona, Spain). Dulbecco’s phosphate buffered saline (PBS) containing 137 mM of NaCl, 2.7 mM of KCl, 10 mM of sodium hydrogen phosphate, and 1.8 mM of potassium dihydrogenphosphate at pH 7.4 was prepared dissolving the pre-weighted tablet from VWR (Radnor, PA, USA) in 100 mL of water. Water was ultrapure H2O generated on a Milli-Q® integral system from Merck Millipore (Darmstadt, Germany). Deuterated prostaglandin F (PGF-D4) with purity ≥ 98% and deuterated incorporation ≥ 99% was purchased from Cayman Chemical Company (Ann Arbor, MI, USA) and employed as internal standard (IS).
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5

Solvent Sourcing for Chemical Analysis

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Cyclohexane (99.8%), chloroform (99%), dichloromethane (99.9%), deuterated mEthanol (99.8%), DMSO (99.9%) and Tempol were purchased from Sigma-Aldrich (Steinheim, Germany). Acetonitrile (99.9%) was purchased from Chromasolv (Seelze, Germany). Formic acid (98%), ethyl acetate (99%) and acetone (99.5%) were purchased from Panreac (Barcelona, Spain). Ethanol (99.9%) was purchased from VWR BDH Prolabo (Monroeville, PA, USA).
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6

Analytical Techniques for Structural Characterization

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Nuclear magnetic resonance (NMR) spectra were recorded in dimethyl sulphoxide (DMSO)-d6 on a Bruker Avance 500 spectrometer operating at 500 MHz (1H) and 125 MHz (13C). Chemical shifts (δ, in ppm) were referenced to tetramethylsilane (TMS), and J was expressed in Hz. FAB-MS was taken on a Thermo Scientific TSQ 8000 Evo Triple Quadrupole mass (70eV) spectrometer (Thermo Fisher Scientific, USA). The UV-Vis spectrum was recorded in mEthanol on a Shimadzu UV-1800 spectrophotometer with silica gel column chromatography (Merck, 107734, Darmstadt, Germany). Ethanol, mEthanol, petroleum ether, ethyl acetate, and n-butanol were obtained from Panreac® (Barcelona, Spain). All chemicals were of analytical reagent grade. A quantity of 2,2-diphenyl-1-picrylhydrazyl (DPPH) in free radical form and acetylcholinesterase (AChE) was purchased from Sigma (Merck KGaA, Darmstadt, Germany).
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7

Optimized Extraction of Bioactive Compounds

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Cyclohexane (99.8%), dichloromethane (99.9%), chloroform (99.9%), 1-butanol (99.7%) (HPLC grade), deuterated chloroform (99.8%) and DMSO (99.9%) were purchased from Sigma-Aldrich (Steinheim, Germany). Acetonitrile (99.9%) was purchased from Chromasolv (Seelze, Germany). Formic acid (98%), ethyl acetate (99%) and acetone (99.5%) were from Panreac (Barcelona, Spain). Ethanol (99.9%) was purchased from VWR BDH Prolabo (Monroeville, PA, USA). Carnosol (98%) was purchased from Extrasynthese (Genay, France), and CA (99.5%) from PhytoLab GmbH & Co. KG (Vestenbergsgreuth, Germany).
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8

Physicochemical Properties Analysis

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Free acidity (FA), peroxide value (PV) and specific extinction values (K232, K270 and ∆K) were determined according to European Union standard methods [18 ].
All the reagents used in this study were of pure analytical grade. Methanol, hexane and ethyl acetate were purchased from Panreac (Barcelona, Catalonia, Spain) and p-hydrophenylacetic acid, o-coumaric acid, orthophosphoric acid and acetonitrile purchased from Merck (Darmstadt, DE, Germany).
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9

Enzyme-Assisted In Situ Synthesis of Catalytic PtNPs

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Potassium tetrachloroplatinate (K2PtCl4), copper(i) bromide (CuBr), polyvinylpyrrolidone (PVP 40K) and acetonitrile (CH3CN) were purchased from Sigma-Aldrich. Hydrated ethylenediaminetetraacetic acid tetrasodium salt (EDTA-Na4) was purchased from Alfa-Aesar. All reagents were used without further purification. Water was ultra-pure grade (type I) obtained with a Milli-Q Simplicity system.
Catalase from Aspergillus niger (CAT) solution (Catazyme®) and glucose oxidase (Gluzyme® Mono 10.000 BG) (GOx) were purchased from Novozymes (Copenhagen, Denmark). Hydrogen peroxide (33%) and ethyl acetate were from Panreac (Barcelona, Spain). 3,4-Dihydroxy-l-phenylalanine (l-DOPA) was from Alfa Aesar (Massachusetts, EEUU). Sodium phosphate, sodium bicarbonate, sodium acetate, sodium borohydride, dioxane, and rhodamine B (RhB) were from Sigma-Aldrich (St. Louis, MO, USA). n-Hexane (98%) and acetonitrile (ACN) were from Scharlau (Madrid, Spain).
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10

Synthesis of Bis-Aldehydes and PAM

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All chemicals used in the synthesis of bis-aldehydes and PAM were purchased from commercial suppliers and were of high purity. Hydroquinone (m.p. = 172–175 °C), resorcinol (m.p. = 110 °C), pyrocatechol (m.p. = 100–103 °C), 4-fluorobenzaldehyde (98%), 44′-dihydroxybiphenyl (97%, m.p. = 284–285 °C), bisphenol A (m.p. = 158–159 °C), (111,333-hexafluoro)–bisphenol propane (m.p. = 160–163 °C) were obtained from Sigma Aldrich. The chemicals K2CO3 anhydrous (Fluka), 14-phenylenediamine (m.p. = 138–143 °C, Sigma Aldrich), 44′-diaminodiphenyl ether (97%, m.p. = 188–192 °C, Sigma Aldrich), p-toluene sulfonic acid monohydrate (PTSA) were purchased from Fluka (Switzerland). The solvents n-hexane, dimethylsulfoxide, and diethyl ether were procured from Merck (Germany) whereas chloroform, ethylacetate, and toluene were purchased from Panreac (Spain). The ethanol, methanol, and N,N-dimethylformamide were obtained from Deijing (Korea) while hydrochloric acid, and sulfuric acid were procured from Riedel-de-Haen (Germany). The solvents used in this work were dried where necessary with standard procedures.[22 ]
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