The largest database of trusted experimental protocols

23 protocols using pgadt7 ad

1

Yeast Two-Hybrid Screening of bHLH Transcription Factors

Check if the same lab product or an alternative is used in the 5 most similar protocols
cDNA of nine bHLH genes (An0204350, An03g04180, An03g05170, An08g01380, An08g04000, An09g06630, An14g02540, An15g03490, and An01g13950) and opi1(An15g02370) were amplified. The PCR products were then constructed into the linearized plasmid pGADT7 AD (Takara, Otsu, Japan), which was digested with EcoRI and BamHI using a NEBuilder® HiFi DNA Assembly Master Mix (NEB, Ipswich, MA, United States). The nine plasmids were then transformed into the S. cerevisiae Y187 strain (Takara). The cDNA of An01g13950 and An02g04350 was amplified by PCR, and the PCR product was constructed into the linearized plasmid pGADT7 AD, which was digested with EcoRI and BamHI. The plasmids pGBKT7-An01g13950 and pGBKT7-An02g04350 were then transformed the S. cerevisiae Y2HGold strain (Takara). The generated transformants were mixed and cultivated in 2 × YPDA liquid medium. The mated strains were cultured for 24 h and plated on selective solid medium DDO (SD/–Leu/–Trp dropout including every essential amino acid except for leucine and tryptophan) or QDO/x/A (SD/–Ade/–His/–Leu/–Trp dropout including every essential amino acid except for adenine, histidine, leucine, and tryptophan and supplemented with X-a-Gal and Aureobasidin A). Media used in Y2H are listed in Supplementary Table S2. Y2H experiment projects are listed in Supplementary Table S5.
+ Open protocol
+ Expand
2

Yeast Two-Hybrid Screening Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
All SUMO CDS were translationally fused with the activation domain of pGADT7 AD (Takara Bio). βC1 was fused with binding domain and cloned into pGBKT7 BD (Takara Bio). Plasmids were transformed into AH109 strain as described previously [71 (link)] Successful transformants were screened on -Leu, -Trp media followed by screening for interaction on -Leu,- Trp, -His with or without 3AT (Sigma-Aldrich). Successful interactions were further screened on –Leu, -Trp, -His, -Ade media.
+ Open protocol
+ Expand
3

Cloning of MYPN, PALLD, and TTN cDNAs

Check if the same lab product or an alternative is used in the 5 most similar protocols
MYPN, PALLD, and TTN cDNAs were isolated by PCR using available constructs or a human cDNA library as a template and cloned into pGADT7 AD (Takara Bio), pGBKT7 DNA-BD (Takara Bio), pET-3d (Merck Life Science), and pETM-14 (Dümmler et al., 2005 (link)) vectors as well as a modified pLexA vector (Stenmark et al., 1995 (link)) using digestion cloning or the In-Fusion HD cloning kit (Takara Bio) according to the manufacturer’s instructions. Primer sequences are listed in Supplementary file 1. All constructs were confirmed by sequencing.
+ Open protocol
+ Expand
4

Cloning of Cytoskeletal Protein cDNAs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human PALLD, MYPN, FHOD1, and ANKRD1 cDNAs, isolated by PCR using available constructs or a human cDNA library as a template, were cloned into pGBKT7 DNA-BD (Takara Bio), pGADT7-AD (Takara Bio), pFN21A HaloTag CMV Flexi (Promega), pNLF1-N [CMV Hygro] (Promega), and pNLF1-C [CMV Hygro] (Promega) vectors using restriction cloning or the In-Fusion HD Cloning Plus kit (Takara Bio) according to the manufacturer’s instructions. Primer sequences are listed in Supplementary file 1. All constructs were confirmed by sequencing.
+ Open protocol
+ Expand
5

Yeast two-hybrid screening protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
All SUMO CDS were translationally fused with the activation domain of pGADT7 AD (Takara Bio). βC1 was fused with binding domain and cloned into pGBKT7 BD (Takara Bio). Plasmids were transformed into AH109 strain as described previously (Gietz and Woods, 2002) Successful transformants were screened on -Leu, -Trp media followed by screening for interaction on -Leu,-Trp, -His with or without 3AT (Sigma-Aldrich). Successful interactions were further screened on -Leu, -Trp, -His, -Ade media.
+ Open protocol
+ Expand
6

Yeast Two-Hybrid Transformation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Yeast transformation was performed as described with minor modifications (Gietz and Woods, 2002) . Freshly streaked AH109 cells were used to initiate primary culture grown overnight in YPD media (yeast extract 1%, bacterial peptone 2%, and dextrose 2%). Cells were grown to A600 = 0.6 OD. About 10 ml of cells were pelleted per transformation. The freshly pelleted cells were transferred to a 1.5 ml centrifuge tube and washed with deionized sterile water followed by 0.1 M lithium acetate. Transformation mixture (PEG 3000 50%, salmon sperm DNA and lithium acetate) was added to the washed cells, and cells were resuspended. The corresponding mixture of AD and BD plasmids was added to the transformation mixture followed by vortexing for 30 s. The mixture was incubated for 30 min at 30°C and 30 min at 42°C. The reaction mixture was removed and cells were resuspended in 2 ml YPD media and allowed to recover for 2h before plating onto an auxotrophic media. All Rec and Rad proteins were translationally fused with the Activation Domain (AD) of pGADT7 AD (Takara Bio). βC1 was fused with Binding Domain (BD) and cloned into pGBKT7 BD (Takara Bio). Plasmids were transformed into AH109 strain as described previously (Gietz and Woods, 2002) . Transformants were screened on -Leu, -Trp media followed by screening for interaction on -Leu,-Trp, -His with or without 3-AT (Sigma-Aldrich).
+ Open protocol
+ Expand
7

Yeast Two-Hybrid Protein Interaction Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The GAL4-based Matchmaker yeast 2-hybrid system (Clontech Laboratories Inc) was used for Y2H analysis. Full-length open reading frames or truncated forms of the target proteins were inserted into pGADT7 (AD) or pGBKT7 (BD) vectors (Clontech Laboratories). The AD and BD constructs were transformed into S. cerevisiae strains Y2H gold (Clontech Laboratories). The representative transformants on SD -Leu, -Trp plates were used for Y2H analysis. The strains were grown in SD -Leu -Trp medium to log phase and plated on the selective plates (SD -Leu, -Trp or SD -Leu, -Trp, -His, with 10 mM 3-amino-1,2,4-triazole [3-AT]) to test protein interaction.
+ Open protocol
+ Expand
8

Cloning and Characterization of Hook and PP1 Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Expression constructs were prepared using primers with unique restriction sites. Hook1 full-length (NM_030014, aa 1-728) and Hook1-AZH (aa 1-263), as well as the truncations Hook1-D1 (aa 1-276), Hook1-D2 (aa 167-458) and Hook1-D3 (aa 459-728) and the deletions Hook1-ΔCC1 (aa 1-728, Δ173-228), Hook1-ΔCC2 (aa 1-728, Δ254-443) and Hook1-ΔSSF2 (aa 1-728, Δ185-283) were generated. Ccdc181 full-length (NM_029115, aa 1-509) as well as the truncations Ccdc181-D1 (aa 1-254), Ccdc181-D2 (aa 248-448) and Ccdc181-D3 (aa 393-509) were generated. For FACS-FRET Hook1 and Ccdc181 were cloned into pEGFP-N1 and DsRed-C1 (Clontech). Additionally, a fusion construct of GFP and DsRed was generated and a fusion construct of Tubulin and GFP was kindly provided by J. Schmid. For yeast-two-hybrid indicated Hook1 and Ccdc181 constructs as well as Hook2 (NM_133255, aa 1-716), Hook3 (NM_207659, aa 1-718) and catalytic subunits of Pp1 (Pp1α (NM_031868, aa 1-330), Pp1β (NM_172707, aa 1-327), Pp1γ1 (NM_013636, aa 1-323) and Pp1γ2 (aa 1-337)) were cloned into pGBKT7-BD (Clontech) and indicated Ccdc181 constructs were also cloned into pGADT7-AD (Clontech). For microtubule-binding assay, indicated Ccdc181 constructs were cloned into pEXPR-IBA43 (IBA).
+ Open protocol
+ Expand
9

Protein Expression and Yeast Two-Hybrid

Check if the same lab product or an alternative is used in the 5 most similar protocols
For protein expression studies, we used pRSET-A and pFN2A Flexi vectors (Thermo Scientific) with competent BL21(DE3) and DH5α cells (NEB, USA). pGAD-T7 Rec (Clontech) was used for the cDNA library preparation, pGADT7-AD (Clontech) as prey vector for one to one assays, and were then transformed in Y2H Gold yeast cells. pGBKT7 (Clontech) was used as a bait vector (DNA-BD) and was transformed into Y187 yeast cells.
+ Open protocol
+ Expand
10

Yeast Two-Hybrid Screening of Rice CDK-KRP Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Y2H assays were performed using the Matchmaker Gold Yeast Two-Hybrid System (Clontech, USA). The open-reading frames of OsCDKA;1, OsCDKA;2, OsCDKB;2, OsKRP1, OsKRP4, OsKRP5, and OsKRP6 were amplified by PCR with the first cDNA cloning primers, and the first PCR products were then amplified by PCR with the second primers (see Supplementary Table S3). PCR fragments of OsCDKA;1, OsCDKA;2, OsCDKB;2, OsKRP1, OsKRP4, OsKRP5, and OsKRP6 were fused into pGADT7-AD and/or pGBKT7-BD (Clontech) using an In-Fusion HD Cloning Kit (Clontech). The final constructs were confirmed by sequencing. Different combinations of bait and prey constructs were transformed into Y2HGold (Clontech), and their ability to grow on leucine- and tryptophan-deficient minimal media (DDO) supplemented with X-α-Gal and Aureobasidin A (DDO/X/A) was assayed at 30°C.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!