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13 protocols using psc833

1

Cholesterol Efflux Assay in Keratinocytes

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ORS keratinocytes were seeded at 2 × 104 cells per well in a 48 well plate and incubated overnight. Cells were treated with 5 µM T0901317 or DMSO vehicle control (0.05%) for 3 days. Cells were washed in Epilife prior to incubation with BODIPY-cholesterol (Avanti lipids, Alabama, USA) (25 µM complexed 1:10 with methyl-β-cyclodextrin (MβCD; Sigma-Aldrich) for 2 h in the dark. Cells were washed in Epilife and equilibrated for 24 h with Acyl-CoA:cholesterol acyltransferase (ACAT) inhibitor, 2 µg/ml Sandoz 58–035 (Sigma-Aldrich). Cells were washed in a 10 mM HBSS-HEPES solution (Lonza) and efflux was initiated by adding cholesterol acceptors, 10 µg/ml Apolipoprotein A-I (ApoA1; Sigma-Aldrich) or 25 µg/ml high-density lipoprotein (HDL; Sigma-Aldrich) with 5 µM PSC833 (Sigma-Aldrich), 10 µM BLT-1 (Sigma-Aldrich) or DMSO vehicle control (0.18%) for 4 h. Background efflux was performed in the absence of cholesterol acceptors, with or without PSC833 or BLT-1. Media was removed and fluorescence measurements performed in black-walled 96 well plates (excitation 485/20 nm, emission 528/20 nm).
Time 0 monolayers were incubated with 1% cholic acid (Sigma-Aldrich) for 1 h at room temperature on a plate shaker. Cells were scraped and fluorescence measured (excitation 485/20 nm, emission 520/20 nm). Efflux calculations were performed, as previously described (Sankaranarayanan et al. 2011 (link)).
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2

Evaluation of ABC Transporter Substrates and Inhibitors

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All ABC transporter substrates and inhibitors used for this study are specific for mammalian ABC transporters but have been examined and reviewed in fish and sea urchins (Luckenbach et al., 2014 (link); Gokirmak et al., 2014 (link)). A summary of substrate and inhibitr-transporter specificities can be found in Table S1 and Table S2. Cyclosporine A (CsA), dimethyl sulfoxide (DMSO), fluorescein diacetate (FDA), ethyl 3-aminobenzoate methanesulfonate (MS-222), mitoxantrone (MTX), MK571, PSC833, Rhodamine B (RhB), verapamil, and vinblastine were purchased from Sigma-Aldrich (St. Louis, MO, USA). Calcein-AM (CAM) was purchased from Biotium (Fremont, CA, USA). 2’,7’-bis(2-carboxyethyl)-5(and 6)-carboxyfluorescein-AM (BCECF-AM), chloromethylfluorescein-diacetate (CMFDA), concanavalin A (conA), 3,3’-dihexyloxacarbocyanine iodide [DiOC6(3), subsequently denoted as DiOC6 in this paper], and mitoTracker red CMXRos (mitoT) were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Calcein was purchased from MP Biomedicals (Burlingame, CA, USA). All stock solutions were prepared in DMSO such that final DMSO concentrations in exposure media did not exceed 0.1%.
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3

Plasmid Preparation for Nanoluciferase Assay

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The preparation of the plasmids for human α3(IV), α4(IV), and α5(IV) for nanoluciferase complementation system was previously described.13 (link) In brief, the SmBiT and LgBiT fragments were fused to the C-terminal of α3(IV) and α5(IV) in the pFC36K SmBiT TK-neo Flexi and pFC34K LgBiT TK-Neo Flexi vectors (Promega), respectively. α4(IV) was subcloned into pEB multi-Hygromycin vector (Wako) and fused with 3×FLAG tag. Mutants of α3(IV) and α5(IV) were generated by site-directed mutagenesis as previously described.10 (link),13 (link) The plasmid for PPIF/CypD/CypF (HG14689-CM) was from Sino Biological. For stable cell lines, α3(IV)-SmBiT, α4(IV)-3×FLAG, and α5(IV)-LgBiT wild type or G1244D were subcloned into pLVSIN vector (Takara), respectively, containing hygromycin, puromycin, or blasticidin resistance genes. The reagents CsA, PSC-833, and trimethyl amine N-oxide (TMAO) were from Sigma-Aldrich. Dimethyl sulfoxide, glucose, mannitol, sorbitol, sucrose, and taurine were from Nacalai Tesque. Trehalose was from Tokyo Chemical Industry. Brefeldin A (BFA) was from calbiochem. ALV (HY-12559) was obtained from Medchem Express. FK506/Tacrolimus was from Abcam.
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4

Quantifying P-gp Activity in Infected Cells

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P-gp activity is assessed by the accumulation of the fluorescent substrates Rhodamine 123 (R123) (Sigma) and FLUO-3-AM (Thermo) [23 (link), 57 (link)]. The specific P-gp inhibitor cyclosporine A (CsA) is used as a control to monitor P-gp activity [23 (link)]. For other inhibitor experiments PSC-833 (Sigma), MK571 (Sigma), or Ko143 (Sigma) were used to inhibit P-gp, MRPs, and BCRP respectively. Uninfected BECs are used as a control for comparison. After infection, cells are washed with Hank’s Balanced Salt Solution (HBSS) (Thermo) and pre-incubated with or without inhibitor (10 μM CsA, 10 μM PSC-833, 10 μM MK571, or 1 μM Ko143) for 1 h at 37 °C + 5% CO2. Following pre-incubation, cells were incubated with 10 μM R123 or FLUO-3-AM with or without inhibitors mentioned for 2 h at 37 °C + 5% CO2. After incubation, cells are washed twice in PBS and 200 μl of RIPA buffer (Thermo) is added and placed on a shaker for 10 min at room temperature protected from light. Fluorescence was measured on a plate reader (Tecan). Next, a BCA protein assay (Thermo) was conducted on each well and fluorescence values are normalized to BCA to account for relative cell number as previously described [23 (link)].
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5

Calcein-AM Uptake Assay with ABC Transporter Inhibitors

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The cells were plated out in black 96-well plates (132 000/cm2) the day before the experiment. The cells were then pre-incubated in L-15 medium with different ABC transporter inhibitors: PSC833 (Sigma-Aldrich), MK751 (Sigma-Aldrich), Ceefourin (Bio-teche, MI, USA) and Probenecid (Biotinum, Fremont, CA, USA), for 15 min before the addition of Calcein-AM (0.25 µM; Sigma-Aldrich). Calcein-AM was dissolved in L-15 medium with the inhibitors, thus all incubations from this point onwards were carried out in the presence of inhibitors. After 1 h incubation the medium was removed, and the cells lysed with PBS/1% Triton. The cellular Calcein-AM uptake was then measured and quantified using a Spectramax i3x plate reader in fluorescence mode (Ex 494 nm/Em 517 nm). To ensure a representative readout of the fluorescent adherent cells, 37 different points were read in each well by using the well scan function of the plate reader. Caco-2 cells were used as a positive control, showing accumulation of Calcein-AM when using similar concentrations of PSC833 and MK751 as with the ASG-10 cells (data not shown).
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6

Evaluating BMEC Efflux Capacity

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Induced pluripotent stem cell-derived BMECs were purified into 24-well plates and subjected to EC medium lacking bFGF and RA for 24 h prior to efflux assays. For inhibition experiments, BMECs were incubated with 10 μM PSC833 (Sigma-Aldrich) or 10 μM MK-571 (Sigma-Aldrich) for 1 h at 37 °C. Following this incubation, BMECs were incubated with 10 μM rhodamine 123 (Sigma-Aldrich; 488 nm excitation and 540 nm emission) or 10 μM 2′,7′-dichlorodihydrofluorescein diacetate (H2DCFDA, ThermoFisher, 492 nm excitation and 527 nm emission), with or without their respective inhibitors, for 1 h at 37 °C. Cells were washed three times with DPBS and subsequently lysed using DPBS with 5% Triton X-100 to measure dye accumulation in the cells. Fluorescence was measured on a BioTek Synergy H1 multi-mode microplate reader. For each condition, one well of cells was not lysed. These conserved wells were fixed for 10 min in 100% ice-cold methanol and incubated with DAPI for 10 min. Cells were washed three times with DPBS and imaged. 6 images per condition were taken, and nuclei count per culture area was found using CellProfiler analysis software [38 (link)]. Fluorescence is reported on a per-cell basis, normalized to control fluorescence from cells treated with fluorescent substrate but no inhibitor.
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7

Establishing Multidrug Resistance Assay

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PSC833, probenecid, calcein-AM, HEPES and MOPS were purchased from Sigma-Aldrich (St. Louis, MO). PSC833 was dissolved in 65% kolliphor and 35% ethanol and stored at −20 °C until use.38 (link) probenecid was dissolved in 1.5 mL 0.1M NaOH and the pH was brought to 7.4 with HCl and was made fresh daily.31 (link) calcein-AM and zosuquidar were diluted in dimethyl sulfoxide. Please see Supplementary Material for details on buffers used in in-vitro electrophysiological experiments and in-vitro calcein accumulation assays.
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8

Molecular Mechanisms of Drug Sensitivity

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AICAR, paclitaxel, puromycin, doxycycline, PSC833 were purchased from Sigma-Aldrich. paclitaxel and PSC833 were dissolved in DMSO; AICAR, puromycin, and doxcycline were dissolved in water. Antibodies against LKB1, phospho-AMPKα, total-AMPKα, phospho-ACC, caspase3, PARP, MDR1 and β-tubulin were purchased from Cell Signaling Technology. Class III β-tubulin (TUBB3) antibody was purchased from Millipore. Antibody against phosphor-tau(S262) was purchased from Invitrogen. β-Actin antibody was purchased from Sigma-Aldrich.
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9

Visualizing Tubular Organoid Function

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The attached organoids were incubated overnight at 37°C with 5 μg/ml of WGA conjugated-647 (biotium) added to the bath in an orbital shaker at 80 rpm. LTL can be used as a marker to specifically visualize proximal tubules. As indicated, organoids were incubated for 1 h with the inhibitors 20 μg/ml PSC-833 (Sigma) or 1 mM Tetrapentylammonium chloride/TPA (Sigma). Rhodamine 123 (Rh123, Sigma) was added to the live imaging medium at a concentration of 10 µM immediately before live imaging. RPMI-free phenol red (Gibco) was used as a culture medium during live imaging.
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10

Drug Sensitivity Assays in Cell Lines

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A549 and HCT-15 cells were purchased from the German Collection of Microorganisms and Cell Cultures (Braunschweig, Germany) and H69AR cells from the American Type Culture Collection (Manassas, VA, United States). Dr. Erasmus Schneider (Wadsworth Center, New York State Department of Health, Albany, NY, United States) kindly provided the MCF-7/MX cells. Cell culture media and supplements were purchased from Thermo Fisher Scientific (Waltham, MA, United States). Yeast extract, peptone, and D-glucose were purchased from Carl Roth (Karlsruhe, Germany). Hoechst 33342, rhodamine 6G (R6G) and adenosine 5′-triphosphate (ATP) were purchased from Sigma-Aldrich (St. Louis, MO, United States) and dissolved in water. Calcein-AM, PSC833, Ko143, MK-571, doxorubicin, mitoxantrone, and ketoconazole (Sigma-Aldrich, St. Louis, MO, United States) were dissolved in dimethyl sulfoxide (DMSO; Carl Roth, Karlsruhe, Germany or Acros Organics, Geel, Belgium). Hepes buffer was purchased from Lonza (Basel, Switzerland). CellTiter-Glo Luminescent Cell Viability Assay was purchased from Promega (Madison, WI, United States). Microtiter plates were purchased from Greiner Bio-One (Kremsmünster, Austria) or Falcon (Corning, NY, United States).
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