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6 protocols using pmd2 g

1

Lentiviral Vector Production and Transduction

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All plasmids were purified utilizing a GenElute HP Plasmid Midiprep Kit (Sigma) after transformation using DH5α cells with ampicillin. Lentiviral packing plasmids, pMD2.G and psPAX2, were purchased from Sigma. LentiCRISPRv2 was obtained as a gift from Dr. Anil Rustgi (Columbia University, New York, NY, USA). The single-guide RNA (sgRNA) sequence targeting the MEN1 gene (Supplemental Table S1) was cloned into the lentiCRISPRv2 vector as previously described [6 (link)]. shRNA plasmids for LXRα were obtained from the University of Pennsylvania Perelman School of Medicine High-Throughput Screening Core (Philadelphia, PA, USA), all of which were derived from a pLKO.1-puromycin backbone, with sequences for the LXRα shRNAs listed in Supplemental Table S1. The pLKO-Tet-On was obtained from Addgene and used to generate doxycycline-inducible menin shRNAs using two validated menin shRNA sequences (Supplemental Table S1) as previously described [23 (link),24 (link)]. To produce lentivirus, 293T cells were transfected with pMD2.G, psPAX2, and the plasmid of interest using Fugene 6 (Promega, Madison, WI, USA) according to the manufacturer’s instructions. After collecting and filtering the virus, cells were then transduced in the presence of 4 μg/mL polybrene (hexadimethrine bromide). Twenty-four hours after completion of transduction, cells were then selected with puromycin for 72 h.
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2

Lentiviral Vector Production and Concentration

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HEK293T cells were grown in 10‐cm dishes to 80% confluency before transfection with the lentiviral vector (10 μg) with packaging vectors including pMD2.G (3 μg, Addgene plasmid # 12259), psPAX2 (6 μg, Addgene plasmid # 12260) and pAdVAntage (3 μg, E1711, Promega) using Lipofectamine 2000 Transfection Reagent (11668019, Thermo Fisher Scientific) according to the manufacturer's protocol. After 16 h, medium was refreshed. Supernatant containing lentivirus was harvested at 24 and 48 h after medium refreshing and pooled together. Supernatant was centrifuged at 300 g to remove cell fragments and passed through 0.45 μm filter. Lentivirus containing > 10 kb length insert (inducible CRISPRi) was concentrated using AVANTI J‐30I centrifuge (Beckman Coulter) with JS‐24.38 swing rotor at 72,000 g for 2 h at 4°C and pellets were dissolved in 200 μl PBS. Other lentivirus, including individual gRNAs, constructively active β‐catenin and SOX9 inducible overexpression, were concentrated using Lenti‐X™ Concentrator (631232, Takara) and pellets were dissolved in 400 μl PBS.
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3

Lentiviral Transduction of Prmt5 Knockdown

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Lentiviral packing plasmids pMD2.G and psPAX2 were purchased from Sigma-Aldrich (St. Louis, USA). shRNA plasmids for Prmt5 was pLKO.1-puromycin backbone-based and obtained from the University of Pennsylvania Perelman School of Medicine High-Throughput Screening Core. To produce lentivirus, as previously reported (Matkar et al. 2015 (link)), 293T cells were transfected with pMD2.G, psPAX2, and the plasmid of Prmt5 shRNA using Fugene 6 (Promega, Madison, USA) according to the manufacturer’s instructions. For all virus production, after collecting and filtering the virus, cells were then transduced. Twenty four hours after completion of transduction, cells were then selected with puromycin for 72 hours.
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4

Lentiviral Vector Production in HEK293T Cells

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The pLentiCRISPR E plasmid (Addgene, 78852, a gift from Phillip Abbosh) was modified with different selectable marker genes, blasticidin, hygromycin or with EGFP, then cotransfected into HEK293T cells with lentiviral packaging plasmids psPAX2 and pMD2.G (Addgene, 12260 and 12259, gifts from Didier Trono). HEK293T cells were cultured in DMEM plus 10% FBS and seeded in 6-well cell plates the day before transfection in such a way that they would be 80% to 90% confluent at the time of transfection. For transfection of one well, 20 μL of FuGene HD Transfection Reagent (Promega, E2311) was diluted into 500 μL of Opti-MEM and then the following DNAs were added: 1 μg gRNA vector, 0.75 μg psPAX2, and 0.25 μg pMD2.G. The solution was briefly vortexed and incubated at room temperature for 20 minutes. The mixture was then gently added to 6-well plates with 1.5 mL DMEM. All media was aspirated after 10 hours and replaced with fresh DMEM containing 10% FBS. Viral particles were harvested 48 hours after this media change and frozen at −80°C.
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5

Lentiviral Transduction of MeCP2 in 293T Cells

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The MeCP2 overexpression plasmid was purchased from Genechem (Shanghai, China). The lentivirus packaging procedures were as follows. For the MeCP2 group, we added 1 μg MeCP2 plasmid (1 μg/μL), 0.75 μg psPAX2, and 0.25 μg pMD2.G (Promega Corporation, Madison, WI, USA) to OPTI-MEM (Thermo Fisher Scientific, Inc.) (total volume 20 μL). For the transfection reagent master, we added 6 μL FuGENE®6 (Promega Corporation) to OPTI-MEM (total volume 80 μL). We then added the FuGENE®6 master to the plasmid solution and incubated the solution for 20 minutes. Next, we added the solution to 293T cells (Central Laboratory of Shanghai Tenth People’s Hospital, Shanghai, China) and incubated the mixture at 37°C for 48 hours. For the control group, we made the plasmid mixture solution using 1 μg of control plasmid. We then collected and purified the supernatant for further experiments. We used a luciferase assay (Bina, 2013) to confirm the complementary sequences between miR-132 and the 3’ untranslated region of MeCP2.
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6

Lentiviral Particle Production Protocol

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Psuedotyped lentiviral particles (LV) were generated using transfer plasmids (above), pCMV delta R8.2 (AddGene Cat. No. 12263), and pMD2.G (AddGene Cat. No. 12259). Such that a final volume of 600 µL was reached, the following components were added, in order, to a 15 mL polypropylene conical tube to yield a transfection mixture: Opti-MEM media (Gibco, Cat. No. 31985062), 0.6 µg pMD2.G, 3.0 µg pCMV delta R8.2, 6.0 µg transfer plasmids, and 42 µL FuGENE 6 (Promega, Cat. No. E2691). The tube was gently flicked to mix the plasmids before and after the addition of FuGENE 6. The transfection mixture was added dropwise to a T-75 flask at approximately 50% confluency of HEK-293-T (American Type Culture Collection Cat. No. CRL-3216) cells in 11.0 mL DMEM/F-12 supplemented to 10% FBS without antibiotics. After 18 h incubation, the media on the HEK-293-T cells was exchanged for DMEM supplemented with 10% FBS and 1% penicillinstreptomycin. At 24 h, 48 h, and 72 h after this media change, the virus-containing supernatant was harvested, syringe filtered (0.45 µm, nylon), and concentrated from ~11 mL to ~250 µL with Amicon Ultra-15 centrifugal filtration unit (100 kDa nominal molecular weight cut off). The LV were then either used immediately or aliquoted and frozen for later use.
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