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Alkyne palmitoyl coa

Manufactured by Cayman Chemical

Alkyne palmitoyl-CoA is a chemical compound that serves as a structural component for various biochemical processes. It is a thioester formed by the condensation of palmitic acid and coenzyme A. This product is commonly used in research applications, but a detailed description of its core function is limited to avoid potential interpretations or extrapolations beyond the factual information available.

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8 protocols using alkyne palmitoyl coa

1

Palmitoylation Kinetics of TEAD2 Transcription Factor

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Recombinant GST-TEAD2 or His6TEAD2 (500 ng) protein was incubated with the indicated concentrations of alkyne palmitoyl-CoA (Cayman Chemical) for 2 h or the indicated time in 50 mM MES, pH 6.4. The reaction was quenched with 1% SDS followed by Click reaction as described previously. Samples were analyzed by SDS-PAGE and streptavidin HRP. Bands intensity obtained from streptavidin blot were quantified using Image J (NIH) and the rate of palmitoylation in arbitrary unit was plotted against the concentration of palmitoyl-CoA. The data was fitted to the Michaelis-Menten equation using Prism v.6.0 (GraphPad). For mass spectrometry analysis, recombinant TEAD2 YBD (1 mg/ml) was incubated with 1 eq. of palmitoyl-CoA for 30 min at room temperature in a buffer containing 50 mM MES, pH 6.4.
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2

Palmitoylation Assay for TEAD2 Transcription Factor

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Recombinant His6-TEAD2 (500 ng) protein was pretreated with MGH-CP compounds at indicated doses for 0.5h followed by incubation with the 1 μM of alkyne palmitoyl-CoA (Cayman Chemical) for 0.5 h in 50 mM MES buffer (pH 6.4). Click reaction was performed as described previously (Zeng et al., 2013 (link)). Briefly, CuSO4/TBTA/TCEP/Biotin-Azide master mix was added into 50 μL protein/palmitoyl-CoA reaction buffer, make the final concentration as CuSO4 100μM, TBTA 10μM, TCEP 100μM and Biotin-Azide 10μM. Samples were incubated for 1h at room temperature, followed by analyzed by SDS-PAGE. Biotinylated TEAD protein was detected by streptavidin-HRP. Band intensities obtained from streptavidin blots were quantified using ImageJ (NIH).
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3

In Vitro Palmitoylation Assay for TEAD2

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Example 10

Recombinant GST-TEAD2 or His6TEAD2 (500 ng) protein was incubated with the indicated concentrations of alkyne palmitoyl-CoA (Cayman Chemical) for 2 h or the indicated time in 50 mM MES, pH 6.4. The reaction was quenched with 1% SDS followed by Click reaction as described previously. Samples were analyzed by SDS-PAGE and streptavidin HRP. Bands intensity obtained from streptavidin blot were quantified using Image J (NIH) and the rate of palmitoylation in arbitrary unit was plotted against the concentration of palmitoyl-CoA. The data was fitted to the Michaelis-Menten equation using Prism v.6.0 (GraphPad). For mass spectrometry analysis, recombinant TEAD2 YBD (1 mg/ml) was incubated with 1 eq. of palmitoyl-CoA for 30 min at room temperature in a buffer containing 50 mM MES, pH 6.4.

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4

In Vitro Palmitoylation Assay

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Recombinant 6xHis-TEAD protein was treated with compounds under indicated concentrations in 50 mM MES buffer (pH 6.4) for 30 min. After incubation with 1 μM of alkyne palmitoyl-CoA (15968, Cayman) for 1 hr, 50 μL of sample mixture was treated with 5 μL of freshly prepared ‘click’ mixture containing 100 uM TBTA (678937, Sigma-Aldrich), 1 mM TCEP (C4706, Sigma-Aldrich), 1 mM CuSO4 (496130, Sigma-Aldrich), 100 uM Biotin-Azide (1167-5, Click Chemistry Tools), and incubated for another 1 hr. The samples were then added 11 μL of 6xSDS loading buffer (BP-111R, Boston BioProducts) and denatured at 95°C for 5 min. SDS-PAGE was used to analyze the samples. Palmitoylation signal was detected by streptavidin-HRP antibody (1:3000, S911, Invitrogen). The total protein level was detected by primary anti-His-tag antibody (1:10,000, MA1-21315, Invitrogen) and secondary anti-mouse antibodies (1:5000, 7076S, Cell Signaling). The band intensities were quantified with ImageJ. The inhibition of auto-palmitoylation by compounds was normalized to DMSO. The IC50 curves were plotted with GraphPad Prism6.
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5

Palmitoylation Kinetics of TEAD2 Transcription Factor

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Recombinant GST-TEAD2 or His6TEAD2 (500 ng) protein was incubated with the indicated concentrations of alkyne palmitoyl-CoA (Cayman Chemical) for 2 h or the indicated time in 50 mM MES, pH 6.4. The reaction was quenched with 1% SDS followed by Click reaction as described previously. Samples were analyzed by SDS-PAGE and streptavidin HRP. Bands intensity obtained from streptavidin blot were quantified using Image J (NIH) and the rate of palmitoylation in arbitrary unit was plotted against the concentration of palmitoyl-CoA. The data was fitted to the Michaelis-Menten equation using Prism v.6.0 (GraphPad). For mass spectrometry analysis, recombinant TEAD2 YBD (1 mg/ml) was incubated with 1 eq. of palmitoyl-CoA for 30 min at room temperature in a buffer containing 50 mM MES, pH 6.4.
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6

High-Throughput Palmitoylation Assay

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Pierce™ Streptavidin-coated, high capacity, black 384-well plates were obtained from Life Technologies (Grand Island, NY), alkyne-palmitoyl-CoA was obtained from Cayman Chemicals (Ann Arbor, MI), MDCK (Madin-Darby canine kidney epithelial) cells (ATCC® CCL-34™) were obtained from ATCC (Manassas, VA), the fluorogenic probe CalFluor 488 was synthesized by the Bertozzi lab; palmitoyl CoA, 2-bromopalmitate, 2-(N–morpholino) ethanesulfonic acid (MES), and tris(2-carboxyethyl)phosphine (TCEP) were obtained from Sigma Aldrich (St. Louis, MO); 3 [tris (3-hydroxypropyltriazolylmethyl) amine (THPTA), maleimide–PEG4–alkyne, and biotin–PEG4–alkyne were obtained from Bioconjugate Technologies (Scottsdale, AZ).
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7

TEAD4 Palmitoylation Detection

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Recombinant TEAD4 protein (500 ng) was incubated with 1 mM alkyne palmitoyl-CoA (Cayman Chemical) for 0.5 h in 20 mM Tris (pH 8.0) and 100 mM NaCl. A click reaction with biotin-azide (Sigma‒Aldrich) was performed for 1 h at 25 °C. The reactions were stopped using 2 × SDS sample buffer, followed by SDS‒PAGE analysis. Biotinylated TEAD4 was detected using streptavidin-IRDye (LI-COR, D10114–10, 1:2000).
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8

Palmitoylation Assay for TEAD2

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Recombinant His6-TEAD2 (500 ng) protein was pretreated with MGH-CP compounds at indicated doses for 0.5 h followed by incubation with the 1 μM of alkyne palmitoyl-CoA (Cayman Chemical) for 0.5 h in 50 mM MES buffer (pH 6.4). Click reaction was performed as described previously65 (link). Briefly, CuSO4/TBTA/TCEP/Biotin-Azide master mix was added into 50 μL protein/palmitoyl-CoA reaction buffer, making the final concentration CuSO4 100 µM, TBTA 10 µM, TCEP 100 µM and Biotin-Azide 10 µM. Samples were incubated for 1 h at room temperature, followed by SDS-PAGE analysis. Biotinylated TEAD protein was detected by streptavidin-HRP. Band intensities obtained from streptavidin blots were quantified using ImageJ (NIH).
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