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5 protocols using studio lite software

1

Gαi Protein Expression in Pituitary Tumors

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To investigate the expression of Gαi proteins in human pituitary tumors, Gαi-1, Gαi-2 and Gαi-3 immunostainings were performed in four prolocatinomas, six somatotropinomas, three ACTH and four NFPA tumors. All tumors were AIP mutation negative. Antibodies used were mouse monoclonal antibody against Gαi-1 (SPM397, sc-56536, Santa Cruz, 1: 40), rabbit polyclonal antibody against Gαi-2 (T19, sc-7276, Santa Cruz, 1: 60) and mouse polyclonal antibody against Gαi-3 (H00002773-B01P, Abnova Corp. Taipei city, Taiwan, 1: 50). Anti-mouse/rabbit/rat secondary antibody, Poly-HRP-GAM/R/R (DPVB55HRP, Immunologic, Duiven, Netherlands) and DAB chromogen (Lab Vision Corporation, Fremont, CA, USA, Thermo Fisher Scientific, Watham, MA, USA) were used for detection. Immunostaining protocol was applied as described [30] (link). The staining intensities of Gαi proteins were scaled as negative (0), weak (1), moderate (2), or strong (3). The images were taken and edited by Leica DM LB microscope (Meyer Instruments, Houston, TX, USA), Olympus DP50 camera (Olympus Corporation, Tokyo, Japan) and Studio Lite software (Licor, Lincoln, NE, USA).
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2

Histological Analysis of Tissue Samples

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Histology was performed on 4 mm sections collected at different time points, formalin-fixed, paraffin-embedded tissues for hematoxylin-eosin staining, and β-galactosidase staining. Images were acquired using an Olympus BX51 microscope (Olympus) and Studio Lite software (Li-COR Biosciences, GmbH).
The hematoxylin-eosin staining was performed by means of a Leica ST5020 (Barcelona, Spain) and CV5030 automatic dye and mounter. To this end, the preparations posed as successive solutions of xylene, alcohols in decreasing gradation (100, 96, and 70%) to hydration, Carazzi hematoxylin, running water, eosin and 1%, increasing alcohol solutions up to complete dehydration (70, 96, and 100%) to finish with the rinsing in two xylene baths and assembly with permanent medium (Sigma-Aldrich).
Immunohistochemistry was performed on 4-μm sections of formalin-fixed, paraffin-embedded tissues. The antibody used was anti-human NIS (hNIS) (rabbit polyclonal) (1:2000), kindly donated by Dr. de la Vieja.
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Quantitative Analysis of Protein Bands

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To quantitatively compare the intensity of Coomassie-stained protein bands (Fig. 4A) or signals obtained by detecting specific proteins with western blotting (Fig. 6B), the LiCOR Studio-Lite software was used.
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Immunoblotting Protocol for Protein Expression Analysis

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For general immunoblotting, cells were lysed in 1% Nonidet P-40 (NP-40) lysis buffer (50 mM Tris [pH 7.4], 150 mM NaCl, 0.5 mM EDTA, 1% NP-40, 0.5% sodium deoxycholate, 1 mM Na3VO4, 1 mM NaF) + complete protease inhibitors (Roche) for 30 min on ice. Lysates were cleared by centrifugation, boiled in 2x sample buffer (Laemmli buffer + 50 μM 2-βME) and separated on 4–20% SDS-PAGE gels (Bio-Rad). Proteins were transferred to nitrocellulose membranes for 10 min using the TransBlot Turbo system (Bio-Rad) and subsequently blocked with Odyssey blocking buffer (LI-COR). Blots were probed with the following Abs: anti-FASN (Cell Signaling Technology #3180), anti-MCL-1 (Cell Signaling Technology #94296), anti-BCL-2 (Cell Signaling Technology #4223), anti-FASL (BD Pharminogen #556372), anti-BIM (Enzo Life Sciences), anti-NUR77 (Biolegend, clone 1E10A15) and anti-β-actin (Sigma-Aldrich). Blots were incubated with IRDye anti-Rabbit or anti-Mouse secondary antibodies (LI-COR) and imaged using the Odyssey CLx instrument. Band intensity quantification was conducted with StudioLite Software (LI-COR).
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5

Immunoblot Analysis of T Cell Proteins

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Whole cell lysates were collected from T cell samples as described previously (75 (link)). Antibodies for immunoblot analysis were Irp2 (IREB2; Thermo Fisher Scientific, PA5-19158), HFE (Invitrogen, PA5-37364), and β-actin (Cell Signaling Technology, 3700S). Blots were incubated with IRDye anti-rabbit or anti-mouse secondary antibodies (LI-COR) and imaged using the Odyssey CLx instrument. Band intensity quantification was conducted with Studio Lite software (LI-COR), and total protein signals were normalized to the β-actin signal for each sample.
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