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Paraformaldehyde (pfa)

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Paraformaldehyde is a white, crystalline solid that is commonly used as a fixative in histology and cell biology. It is a polymer of formaldehyde and is soluble in water. Paraformaldehyde is used to preserve and maintain the structural integrity of cells and tissues during sample preparation for microscopy and other analytical techniques.

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5 protocols using paraformaldehyde (pfa)

1

Immunostaining of N-cadherin Functional Forms

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For the detection of the functional forms of N-cadherins (i.e., the N-cadherins closely linked to the actin network, which are PFA insoluble), the MBs were fixed with a 4% (w/v) PFA (Alpha Aesar, Heysham, UK) for 30 min and permeabilized with 0.2 to 0.5% (v/v) Triton X-100 (Sigma-Aldrich) for 5 min. Alternatively, the aggregates were incubated for 5 min with 100% cold methanol followed by 1 min with cold acetone, for the detection of total N-cadherins (i.e., the PFA-soluble and PFA-insoluble forms).
Then, the samples were blocked with 5% (v/v) FBS in PBS for 30 min and incubated with a rabbit polyclonal anti–N-cadherin primary antibody (ab18203, Abcam, Cambridge, UK) diluted at 1:100 in 1% (v/v) FBS for 4 hours. After washing with PBS, the samples were incubated with an Alexa Fluor 594–conjugated goat polyclonal anti-rabbit IgG secondary antibody (A-11012, Life Technologies, Saint Aubin, France) diluted at 1:100 in 1% (v/v) FBS for 90 min. Last, the cells were counterstained with 0.2 μM DAPI for 5 min (Sigma-Aldrich) and then washed with PBS.
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2

Cell Invasion Assay with Matrigel

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Cell invasion assays were performed using transwell membranes coated with Matrigel (BD Biosciences, Franklin Lakes, NJ, USA). Transfected cells were plated at a density of 3×104 cells per well in the upper chamber and in serum-free medium. The lower chamber was filled with 20% FBS as a chemo-attractant. After 24 h of incubation, cells remaining in the upper chamber of each well were carefully removed with cotton swabs, and invading cells were fixed with 3% paraformaldehyde (Abcam, Shanghai, China), stained with crystal violet (Abcam, Shanghai, China), and counted from three independent fields (×100 magnification).
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3

Phagocytosis Assay for Raw 264.7 Cells

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Raw 264.7 cells were prepared as described for the gentamicin protection assay. In order to dissociate phagocytosis from bacterial invasion of Raw 264.7 cells, we used inert beads to measure effects on phagocytosis alone; 1:10 (Raw 264.7 cells: beads) of 2 μm conjugated beads (Polysciences Inc.) were added to the culture for 2 h. Cells were treated as previously described and fixed using 4% paraformaldehyde, then stained with β-actin primary antibody (1:40; Abcam) and DAPI (1:1,000; Thermo Fischer). Slides were examined using an Olympus IX-81 microscope with a Yokagawa spinning disk confocal head, 60X oil immersion lens with a 1.42 numerical aperture, and a Hamamatsu EMCCD camera. Images were taken with equal exposure time without saturation and analyzed with Volocity imaging software (PerkinElmer). Illustrations were formatted, for noise reduction and increased sharpness, using Image J (National Institute of Health, Maryland, USA). Phagocytosis was measured by the number of beads inside the macrophages divided by the total number of macrophages in each randomly selected image. Ten photos of each treatment were taken from duplicate repeats.
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4

Quantification of Hippocampal Neurons

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We labeled the hippocampal neurons using the immuno uorescence staining to determine the number of hippocampal neurons. We rst cultured the hippocampal neurons for ve days, and then, xed the neurons with 4% paraformaldehyde for fteen minutes followed by incubating overnight with a neuron speci c primary antibody (1:200 dilution; Abcam, Cambridge‚ UK) against neuron-speci c enolase and nally the secondary antibody were added to tag the uorophore. In order to label all the cell nucleus, the cultures were co-stained with 4',6-diamidino-2-phenylindole (DAPI). Finally, we imaged the neurons by the uorescence microscope. The content of neurons was assessed by comparing the number of double stained cells with and the number of single stained with only DAPI in each optical eld.
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5

Immunostaining of Cell-Material Interactions

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The expressions of integrin β1, vinculin, F-actin, osteocalcin (OCN), and osteopontin (OPN) were detected by a CLSM. Briefly, cells were fixed in 4% paraformaldehyde, rinsed with PBS, and permeabilized by 0.2% Triton-100 (Abcam, USA) for 15 min at room temperature after culture for 24, 48, and 96 h on disc-shaped Ti samples. Proteins mentioned above were immunostained with their antibodies as described herein [39] .
Nuclei were counterstained with DAPI for 5 min. Samples were then rinsed and observed by a CLSM.
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