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5 protocols using 3 n morpholino propanesulfonic acid buffer

1

Western Blot Analysis of Metabolic Proteins

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Proteins were resolved on 10–12% (w/v) NuPAGE BisTris gels in 3‐(N‐morpholino)propanesulfonic acid buffer (Life Technologies) and transferred to polyvinylidene fluoride membrane. Proteins were analysed by western blot using the following antibodies: phospho‐acetyl‐CoA carboxylase, AMPKα (pT172) and AMPKβ (all at 1 : 1000; Cell Signaling Technology, Beverly, MA, USA).
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2

Western Blot Protein Analysis

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Proteins were separated by gel electrophoresis using NuPAGE gels and 3-(N-morpholino) propanesulfonic acid buffer (Life Technologies). Proteins were transferred onto nitrocellulose membranes for 60 min at 100 V at 4°C. The membranes were blocked with tris-buffered saline (TBS) containing 5% (wt/vol) blotting-grade nonfat dry milk blocker (Rockland, Limerick, PA) and 0.1% (wt/vol) Tween 20. Proteins were detected by probing the membranes with the indicated primary antibodies at appropriate dilutions and using a detection system consisting of horseradish peroxidase–conjugated secondary antibodies (Bio-Rad Laboratories, Hercules, CA) and the chemiluminescence substrates SuperSignal, WestPico, and WestFemto (Thermo Scientific) and then visualized using Hyperfilm (Denville Scientific, Holliston, MA).
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3

Western Blotting and Immunoprecipitation Protocol

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Proteins were separated by gel electrophoresis using NuPAGE gels and 3-(N-morpholino)propanesulfonic acid buffer (Life Technologies). Proteins were transferred onto nitrocellulose membranes for 120 min at 100 V at 4°C. The membranes were blocked with phosphate-buffered saline (PBS) containing 5% (wt/vol) blotting-grade nonfat dry milk blocker (Rockland, Limerick, PA) and 0.05% (wt/vol) Tween 20. Proteins were detected by probing the membranes with the indicated primary antibodies at appropriate dilutions and using a detection system consisting of horseradish peroxidase–conjugated secondary antibodies (Bio-Rad Laboratories, Hercules, CA) and the chemiluminescence substrates SuperSignal, WestPico, and WestFemto (Thermo Scientific) and then visualized using Hyperfilm (Denville Scientific, Holliston, MA). For immunoprecipitation assay, cells were lysed either by nitrogen cavitation in relaxation buffer supplemented with 1% NP-40 or directly using RIPA buffer (50 mM Tris/HCl, 150 mM NaCl, 0.1% SDS, 0.5% sodium deoxycholate, 1% NP-40), the samples were cleared by centrifugation, and the supernatants were then incubated with anti–M2 agarose beads (Sigma-Aldrich, St. Louis, MO) at 4°C with rotation overnight. After three washes with lysis buffer, the immunoprecipitates were subjected to Western blotting.
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4

Thermal Stability Assay for AAV Capsids

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AAV samples were diluted with a solution mixed 4 × lithium dodecyl sulfate sample buffer (Thermo Fisher Scientific) and 10 × reducing agent (Thermo Fisher Scientific) at 5:2 ratio. The mixtures containing the AAV samples (∼2.0 × 1010 vg) were incubated for 10 min at 65, 75, and 80°C for AAV2, AAV6, and AAV1, respectively. The heating temperature was determined from the conformational stability of the capsid. The samples and ladder solution (BenchMark™ Protein Ladder; Thermo Fisher Scientific) were loaded to a 4–12% Bis Tris gel (Thermo Fisher Scientific) and run in 1 × 3-(N-morpholino)propanesulfonic acid buffer (Thermo Fisher Scientific) for 100 min at a constant voltage of 100 V. SYPRO® Ruby dye (Thermo Fisher Scientific) was used for staining the gel. The gel after running was fixed, stained, and washed according to the manufacturer's instructions. The density of brightness of stained gel was quantitatively analyzed by an iBright 1500 instrument (Thermo Fisher Scientific) and iBright Analysis Software ver 4.0.0 (Thermo Fisher Scientific).
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5

LRNV Particle-Induced Akt Activation in HUVECs

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HUVECs were
grown to 80% confluence in six-well tissue culture-treated plates
in EGM-MV2. Medium was then changed to 1% EGM-MV2, 1 × 109 LRNV particles/mL were added, and then incubated for 48 h.
Following incubation, cells were lysed in RIPA lysis buffer (Thermo
Fisher Scientific) with 1× protease inhibitors cocktail (Millipore
Sigma) and 1× phosphatase inhibitors (Santa Cruz Biotech). The
protein concentration of the cell lysate was quantified using a Bicinchoninic
Acid Assay Kit (Thermo Fisher Scientific) per manufacturer’s
protocol. Akt activity was assessed using Western blotting. Fifteen
micrograms of protein was loaded onto 4–12% Criterion Bis-Tris
protein gels (Bio-Rad) run at a constant 150 V using 3-(N-morpholino) propanesulfonic acid buffer (Thermo Fisher Scientific).
Proteins were then transferred onto a nitrocellulose membrane and
probed with 1:1000 dilutions of Akt (#9272, Cell Signaling Technologies)
and GAPDH (#6C5, Santa Cruz Biotech) antibodies.
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