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5 protocols using anti sirt5

1

Protein Expression Analysis by Western Blotting

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Tissues and cells were lysed in RIPA buffer (cat#V900854, Sigma, MO, USA) and protein concentration was measured with the BCA method (cat#P0012, Beyotime, Shanghai, China). Proteins were isolated by SDS-PAGE, transferred to PVDF membranes (Millipore, Billerica, USA), incubated with primary and secondary antibodies and imaged with the ECL detection reagent (cat#12630, CST, California, USA) using a ChemiDoc™ XRS+ System. The primary antibodies included anti-Mus81 (1:1,000; cat#ab14387, Abcam, Cambridge, UK), anti-BRD4 (1:1,000; cat#ab128874, Abcam), anti-ZEB1 (1:1,000; cat#ab180905, Abcam), anti-E-cadherin (1:1,000; cat#3195, CST, California, USA), anti-N-cadherin (1:1,000; cat#13116, CST), anti-Snail1 (1:1,000; cat#9782, CST), anti-ZEB2 (1:1,000; cat#14026-1-AP, Proteintech, Wuhan, China), anti-Sirt5 (1:500; cat#15122-1-AP, Proteintech), anti-GAPDH (1:5,000; cat#G9545, Sigma). The secondary antibodies included HRP conjugated goat anti-Rabbit (1:3,000; SA00001-15, Proteintech) and anti-Mouse (1:3000; cat# SA00001-1, Proteintech).
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2

Western Blot Analysis of Sirtuins

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Cells and mice tissue were lysed in RIPA buffer with PMSF (Beyotime, Shanghai, China), and then protein was adjusted to the same level, added loading buffer and boiled at 100 °C for 5 min. A 50µg mass of protein lysates were loaded on 10% SDS-PAGE gels and transferred using PVDF membranes. After block, the membranes were incubated overnight with anti-SIRT3 (1:1000; Thermo, Waltham, MA, USA), anti-SIRT4 (1:1000; Thermo, Waltham, MA, USA), anti-SIRT5 (1:1000; Proteintech, Wuhan, Hubei, China) or anti-β-actin primary antibodies (1:1000; Cell Signaling Technology, Danvers, MA, USA), followed by incubation with appropriate secondary antibodies (1:10,000; Cell Signaling Technology, MA, USA) at 37 °C for 1h. The signal was visualized and captured with a ChemiDoc XRS+system (Bio-Rad, Hercules, CA, USA).
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3

Immunohistochemical Analysis of SIRT5 Expression

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Mice were anesthetized with an overdose of choral hydrate and with the cervical dislocation execution. The right ankle joint of mice was taken and samples collected were decalcified in 13% EDTA (pH 7.3), then placed in 30% sucrose overnight and embedded in OCT at −20 °C the next day. Frozen sections were cut (30 μm) and placed on glass micro slides coated with APS. Sections were fixed in 4% paraformaldehyde and incubated in a blocking solution containing 3% BSA, 0.02% Na N30.1%, and Triton X-100 in PBS for 2h at room temperature. After blocking, sections were incubated with the appropriate primary antibodies in a blocking solution at 4 °C overnight. The primary antibodies used were: anti-SIRT5 (1:400) from ProteinTech. The secondary antibody was a goat anti-rabbit (1:500) antibody (ProteinTech Group, Chicago, IL, USA). Slides were mounted with coverslips and visualized using a fluorescence microscope (CKX41 with an Olympus U-RFLT50 Power Supply Unit; Olympus, Tokyo, Japan). Image-pro plus 6.0 (Media Cybernetics, Inc., Rockville, MD, USA) was applied to analyze the integrated optic density (IOD) and pixel area (AREA), and calculated the average optical (AO), AO = IOD/AREA.
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4

Protein Extraction and Western Blot Analysis

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The tissues were immediately excised to extract proteins. Sampled proteins were prepared by adding a lysis buffer containing 250 mM NaCl, 50 mM Tris–HCl pH 7.4, 50 mM sodium F, 1%NP-40, 0.02%Na N3, 5 mM EDTA, 1 mM Na3VO4, and 1 × protease inhibitor cocktail (AMRESCO, Solon, OH, USA). After homogenization using a Bullet Blender homogenizer (Next Advance, NY, USA), the extracted proteins (30 μg per sample assessed by BCA protein assay) were subjected to 8% SDS-Tris glycine gel electrophoresis and transferred to a PVDF membrane. The membrane was blocked with 5% non-fat milk in TBS-T buffer (10 mM Tris pH 7.5, 100 mM NaCl, 0.1% Tween 20), incubated with the primary antibody in TBS-T with 1% bovine serum albumin for 1 h at room temperature. After peroxidase-conjugated secondary antibody (1:5000) was used, the image intensities of specific bands were quantified using ImageJ software (Bethesda, MD, USA). Antibodies used in the experiments were: anti-β-ACTIN (ProteinTech Group, Chicago, IL, USA), and anti-SIRT5 (ProteinTech Group, Chicago, IL, USA).
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5

Co-IP Validation of Protein Interactions

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Co-IP experiments were performed to verify the binding between proteins of interest in NP cells. The co-IP complexes were purified by a MilliporeSigmaTM PureProteomeTM Protein A/G Mix Magnetic Bead System (#LSKAGAG10, Fisher Scientific, USA). The dosage of the IP antibody was 5 µg of anti-AIFM1 (Santa Cruz Biotechnology, sc-13116, USA) and 4 µg of anti-SIRT5 (Proteintech, 15122-1-AP, China). The proteins were harvested and analyzed by Western blot analysis.
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