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7 protocols using riboflavin

1

Collagen Type-I Atelocollagen Preparation

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Collagen (type-I atelo-collagen) was acquired from Nippon Ham Foods Co., Ltd., Osaka, Japan. Carbonate buffer was purchased from DKK-TOA Co., Ltd., Tokyo, Japan, as a pH 10.02 standard solution powder reagent, 0.1 M Hydrochloric Acid, and riboflavin from Wako Pure Chemical Industries (Osaka, Japan). These chemicals were used without further purification.
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2

Synthesis of Pyridine Derivatives

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Thiamine hydrochloride, riboflavin, pyridoxine hydrochloride, pyridoxal phosphate monohydrate, cyanocobalamin, nicotinamide, folate, and L (+)-ascorbic acid were purchased from Wako Pure Chemical Industries. 4-Pyridoxic acid (4-PIC) was synthesized by ICN Pharmaceuticals and obtained from Wako Pure Chemical Industries. N1-Methylnicotinamide (MNA) chloride was purchased from Tokyo Chemical Industries. N1-Methyl-2-pyridone-5-carboxamide (2-Py) and N1-methyl-4-pyridone-3-carboxamide (4-Py) were synthesized employing the methods of Pullman and Colowick17 (link) and Shibata et al,18 (link) respectively. All other chemicals used were of the highest purity available from commercial sources.
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3

Customized DMEM Mixture for Cell Culture

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Modified mixtures of DMEM were prepared by adding selected components from the 14 amino acids and the eight vitamins contained in basic DMEM into HBSS (pH 7). The concentration of each component is as follows: Amino acids: 0.084 g/L L-Arginine HCl (Tokyo Chemical Industry Co., Ltd. (TCI), Japan), 0.0626 g/L L-Cystine diHCl (TCI), 0.03 g/L Glycine (FUJIFILM Wako Pure Chemical Corporation. (Wako), Japan) 0.042 g/L L-Histidine HCl monohydrate (TCI), 0.105 g/L L-Isoleucine (Wako), 0.105 g/L L-Leucine (TCI), 0.146 g/L L-Lysine monoHCl (TCI), 0.03 g/L Methionine (TCI), 0.066 g/L L-Phenylalanine (TCI), 0.042 g/L L-Serine (TCI), 0.095 g/L L-Threonine (TCI), 0.016 g/L L-Tryptophan (Sigma), 0.12037 g/L L-Tyrosine Disodium Salt Dihydrate (NACALAI TESQUE, INC., Japan), 0.094 g/L L-Valine (TCI). Vitamins include 0.004 g/L Choline Cl (TCI), 0.004 g/L Folic acid (Wako), 0.0072 g/L myo-Inositol (TCI), 0.004 g/L Nicotinamide (TCI), 0.004 g/L Calcium D-pantothenate (TCI), 0.00404 g/L Pyridixine HCl (Wako), 0.0004 g/L Riboflavin (Wako), and 0.004 g/L Thiamine HCl hydrate (TCI).
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4

Analytical Methods for Vitamin Compounds

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Thiamin hydrochloride (C12H17ClN4OS-HCl; molecular weight = 337.27), riboflavin (C17H20N4O6; molecular weight = 376.37), pyridoxine hydrochloride (C8H11NO3-HCl; molecular weight = 205.63), pyridoxal phosphate (PLP) monohydrate (C8H10NO6P-H2O; molecular weight = 265.16) cyanocobalamin (C63H88CoN14O14P; molecular weight = 1355.40), nicotinamide (C6H6N2O; molecular weight = 122.13), calcium pantothenate (C18H32N2O10-Ca; molecular weight = 476.54), folic acid (C19H19N7O6; molecular weight = 441.40), D(+)-biotin (C10H16N2O3S; molecular weight = 244.31), and L(+)-ascorbic acid (C6H8O6; molecular weight = 176.13) were purchased from Wako Pure Chemical Industries. 4-Pyridoxic acid (4-PIC; C8H9NO4; molecular weight = 183.16) was made by ICN Pharmaceuticals (Costa Mesa, CA, USA) and obtained through (Wako Pure Chemical Industries, Osaka, Japan).
N1-methylnicotinamide (MNA) chloride (C7H9N2O-HCl; = molecular weight = 159.61) was purchased from Tokyo Kasei Kogyo (Tokyo, Japan). N1-methyl-2-pyridone-5-carboxamide (2-Py, C7H8N2O2; molecular weight = 152.15) and N1-methyl-4-pyridone-3-carboxamide (4-Py, C7H8N2O2; = 152.15) were synthesized employing the methods of Pullman and Colowick28 (link) and Shibata et al,29 (link) respectively. All other chemicals used were of the highest purity available from commercial sources.
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5

Antioxidant Activity Evaluation Protocol

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Shikonin and alkannin were purchased from Wako Pure Chem. Ind. Ltd. (Osaka, Japan) and stocked frozen (−20°C) in small aliquots as 30 mM solutions in dimethylsulfoxide (DMSO; Wako). Myristic acid, sodium salt (MA), 2,2'-azobis(2-aminopropane) dihydrochloride (AAPH), riboflavin, Trolox, sodium diethyldithiocarbamate (DETC), and ferrous sulfate were also from Wako. Cytochrome c (type VI from horse heart), β-NADPH, superoxide dismutase (SOD), and oxyhemoglobin (Oxy-Hb) were from Sigma. Spin trapping reagent 5-(2,2-dimethyl-1,3-propoxy cyclophosphoryl)-5-methyl-1-pyrroline-N-oxide (CYPMPO) was from Radical Research (Tokyo, Japan). 3-(2-hydroxy-1-methyl-2-nitrosohydrazino)-N-methyl-1-propanamine (NOC-7), EDTA2Na, and n-heptyl-β-thioglucoside were from Dojindo Laboratories (Kumamoto, Japan). All the reactions were performed under aerobic conditions, and the solutions were not deaerated.
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6

Native Gel Assay for SOD Activity

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A native gel-based assay for examining SOD activity was carried out according to a previously described method [48 (link)] with slight modifications. Cells were sonicated in a 50 mM potassium phosphate buffer (pH 7.8). Cell protein (20 µg/lane) was run on a native riboflavin gel comprising a 5% stacking gel (pH 6.8) and a 12% running gel (pH 8.8) at 4 °C. To visualize SOD activity, gels were first soaked in 2.43 mM nitro blue tetrazolium (Wako Pure Chemical Industries, Osaka, Japan) in deionized water for 20 min and then in 56 nM riboflavin (Wako Pure Chemical Industries, Ltd., Osaka, Japan) with 28 mM N,N,N′,N′-tetramethylethylenediamine (Sigma Aldrich, St. Louis, MO, USA) in a 50 mM potassium phosphate buffer (pH 7.8) for 15 min in the dark. Gels were washed with deionized water and illuminated under fluorescent light until clear zones of SOD activity were evident. The images were recorded and MnSOD bands were quantified using the AlphaImager imaging system (Alpha Innotech, San Leandro, CA, USA). MnSOD activity was assessed by examining the band density. The MnSOD activity of vector-only-transfected control cells was normalized to a value of 1.0 and relative MnSOD activities in other cells were calculated. Results were calculated as the mean of the integrated density from five independent runs.
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7

Nitro-PAHs and Vitamins Purification

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Nitro-polycyclic aromatic hydrocarbons and vitamins were used as received without further purification. 1-Nitronaphthalene, riboflavin (vitamin B2), folic acid (vitamin B9), and cyanocobalamin (vitamin B12) were purchased from Wako Pure Chemical. 1,6-Dinitropyrene and 6-nitrochrysene in toluene (100 μg/mL) were obtained from AccuStandard Inc. 1-Nitropyrene was obtained from Acros Organics. Water was deionized and purified with a Millipore Milli-Q system. Acetonitrile of HPLC grade was purchased from Sigma-Aldrich. All of the solvents were filtered through membrane filters of 0.20 μm pore size supplied by Advantec Co., Ltd.
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