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7500 apparatus

Manufactured by Thermo Fisher Scientific
Sourced in Japan

The 7500 apparatus is a laboratory equipment designed for performing a variety of analytical tasks. It features a compact and durable construction, making it suitable for use in various laboratory settings. The core function of the 7500 apparatus is to provide reliable and consistent results for the intended analytical procedures.

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5 protocols using 7500 apparatus

1

Comprehensive Characterization of Nanoparticles

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The Supo HHS-6 electro-thermostatic water bath and the Evela N-1200A rotary evaporator were used. The freeze-drying method was operated by Biosafer Biosafer-10A and Christ Alpha 1–2 LD plus vacuum freeze-dryers. The size distribution and zeta potential were determined using a Malvern Zetasizer nano ZS analyzer. The UV used a Shimadzu UV-2600 UV-vis spectrophotometer, and the ATR-FTIR used a Perkin Elmer Spectrum two infrared analyzer. The JEOL JEM-2010HR was operated for TEM observation.
The cell cycles were performed by a Beckman CytoFLEX S flow cytometry analyzer. Cell proliferation was determined with a Multiskan FC ThermoFisher microplate reader. The quantitative RT-PCR was conducted with 7500 apparatus, Applied Biosystems (Waltham, MA, USA).
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2

Transcriptome Analysis via qRT-PCR

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Total RNA was isolated using TRIzol reagent according to the manufacturer's instruction (Thermo Fisher, USA), and cDNA was synthesized by using the PrimeScript RT Reagent Kit (RR036A, Takara, Japan). The resulting cDNA was used for quantitative RT–PCR by using SYBR Green Master Mix (RR820B, Takara, Japan) in 7500 apparatus (Applied Biosystems). RT–PCR primer sequences are listed in Table EV1.
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3

Total RNA Extraction and qRT-PCR Analysis

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Total RNA was isolated by using Trizol Reagent (Thermo Fisher, USA) from cells or patients' samples according to the manufacturer's instructions. The total RNA was reversely transcript into cDNA with the PrimeScript RT Reagent Kit (RR036A, Takara, Japan) and followed quantitative RT-PCR by using SYBR Green Master Mix (RR820A, Takara, Japan) in 7500 apparatus (Applied Biosystems, USA). The primers for RT-PCR were listed in Table S2.
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4

Plasmid Copy Number Quantification

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The copy number of pRK415 and its derivatives was measured by qPCR using the SYBR® Green JumpStart™ Taq ReadyMix kit (Sigma). The single-copy galK, gene from E. coli chromosome, was used as the chromosomal reference gene (primers #26 and #27) for all strains. The trfA gene of RK2 was used as the plasmid reference gene (primers #28 and #29) for pRK415 derivatives and pMPB9.90 (araBADp-trfARK2) whereas repB gene was amplified for plasmid RA3 (primers #30 and #31) (Table 2). Total DNA was purified from 4 ml of stationary-phase cultures using Genomic Mini purification kit (A&A Biotechnology), treated with an appropriate restriction enzyme to linearize the plasmid DNA and to fragment chromosomal DNA and then used as a template in qPCR. Plasmid copy number (PCN) was calculated relatively to the chromosomal marker on the basis of at least three biological replicates with three technical replicates per strain and average results with standard deviation are reported. The amplification, detection and analysis were carried out in the Laboratory of Genetic Modification Analyses of IBB PAS on an Applied Biosystems 7500 apparatus.
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5

Quantitative RT-PCR Analysis of RNA

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Total RNA was isolated using Trizol reagent according to the manufacturer’s instruction (ThermoFisher, USA) and the cDNA was synthesized by using the PrimeScript RT reagent Kit (RR036A, Takara, Japan). The resulting cDNA was used for quantitative RT-PCR by using SYBR-Green Master mix (RR820B, Takara, Japan) in 7500 apparatus (Applied Biosystems). RT-PCR primer sequences are listed in Table S1.
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