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Abi hidi formamide

Manufactured by Thermo Fisher Scientific
Sourced in United States

ABI HiDi Formamide is a laboratory reagent used in DNA sequencing applications. It is a highly deionized formamide solution designed for use with Sanger sequencing methods.

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2 protocols using abi hidi formamide

1

Sanger Sequencing of UBA1 in VEXAS

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Sanger sequencing method was performed to screen mutations in the UBA1 gene considered the pathognomonic alteration of VEXAS syndrome and not included in our t-NGS panel. Fifty ng of DNA sample were used for the first amplification reaction (Polymerase Chain Reaction, PCR) of the specific target region of the UBA1 gene (exon 2), using primers reported in Supplementary Table 2. PCR productions were purified using GeneUP ExoSAP kit (Applied Biosystems, Waltham, USA) and 2 µl of purified products were used for subsequent Sequencing PCR following the manufacture’s protocol of BigDye® terminator v3.1 cycle sequencing kit (Applied Biosystems, Waltham, USA). Sequencing reaction products were purified using the CentriSep columns (Applied Biosystems, Waltham, USA) according to the manufacturer's recommendations. Samples were diluted with 16 µl of ABI HiDi Formamide (Applied Biosystems, Waltham, USA) and resolved on ABI 3130 automated sequencer (Applied Biosystems, Waltham, USA). Sequence Scanner Software 2.0 was used to analyze the results.
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2

Microsatellite Analysis by Capillary Electrophoresis

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The capillary electrophoresis was conducted in a 11.5 μL reaction volume comprising of 0.5 μL GS-600 LIZ size standard (Applied Biosystems, CA, USA), 10.0 μL ABI HiDi formamide (Applied Biosystems, CA, USA) and 1.0 μL of 10-fold diluted microsatellite PCR product. The mixture was denatured at 95°C for 5 min and immediately cooled on ice before capillary electrophoresis on the ABI 3500xl genetic analyser (Applied Biosystems, CA, USA).
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