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7 protocols using igg g18 145

1

Assessing HA-Directed B Cell Binding

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In order to assess HA- directed B cell binding and cross-reactivity, peripheral blood mononuclear cells (PBMC’s) from samples with different stem binding based on ELISA assay (n = 18) were further analyzed by flow cytometry. Three groups were selected for the analysis: negative for stem antibodies (n = 5), reactive to one stem only (n = 4), and samples with cross-reactive stem binding (n = 9). Cryopreserved PBMC’s were thawed in R-10 media containing 50 U/mL of Universal Nuclease (ThermoFisher). Cells were washed and resuspended in PBS for staining with UV-Blue viability dye (ThermoFisher) for 20 minutes at room temperature. After washing, surface staining was performed using antibodies against IgM (G20-127, BD Biosciences), IgG (G18-145, BD Biosciences), CD8 (RPA-T8, BioLegend), CD3 (OKT3, BioLegend), CD56 (HCD56, BioLegend), CD14 (M5E2, BioLegend), CD19 (J3-119, Beckman Coulter), CD27 (O323, BioLegend), CD38 (HIT2, BioLegend), and HA probes27 –29 (link). H1 NC 99 and H5 INDO 05 HAs were expressed and biotinylated followed by fluorochrome labeling as previously described29 (link). Stained cells were run on a BD LSRFortessa X-50 and data analysis was performed using FlowJo (TreeStar). The gating strategy is demonstrated in supplemental Fig. 2. Statistical significance at 95% confidence interval was done using two-tailed t-test.
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2

Profiling SARS-CoV-2 Omicron-specific B cells

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Before staining with antibodies and RBD tetramers, B cells were enriched from PBMCs using a Pan B cell Isolation Kit (Miltenyi Biotech, #130-101-638) and LS column (#130-042-401); 1 × 106 B cells were incubated with BD Horizon™ Fixable Viability Stain 510 for 15 min at room temperature in the dark. After washing, the cells were stained at 4 °C, protected from light for 30 min, using a panel of fluorochrome-conjugated primary antibodies and RBD tetramers in the optimized concentrations. The antibodies in the panel, mouse anti-human CD3 (SK7), CD56 (NCAM16.2), CD14 (M5E2), CD19 (HIB19), CD20 (2H7), CD27 (M-T271), IgD (IA6-2), CD38 (HB-7, BioLegend), CD10 (HI10a, BioLegend), CD21 (B-ly4, BD Biosciences), CD38 (HIT2), CD138 (MI15), IgM (UCH-B1), and IgG (G18-145), were purchased from BD Biosciences. Fluorescent-conjugated Omicron RBD-APC and -PE proteins were prepared by mixing biotinylated RBD protein (Acro Biosystem, SPD-C82E4) and Streptavidin-APC or -PE in a 4:1 molar ratio and incubated for 15 min at room temperature. Flow cytometry was performed on a BD LSRII (BD Biosciences), and data were acquired with BD FACSDiva Software (8.0.2) and analyzed using FlowJo software (version 10).
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3

Multiparameter Flow Cytometry of Macaque Immune Cells

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The following fluorochrome conjugated monoclonal antibodies reactive with macaque cells were used for flow cytometry studies: CD3 (SP34-2, BD Biosciences [BD]), CD4 (L200, BD), CD8 (SK1, BD), CD95 (DX2, BD), CD28 (CD28.2, BioLegend), CCR5 (3A9, BD), CXCR5 (MU5UBEE, Invitrogen), PD-1 (EH12.2H7, BioLegend), ICOS (C398.4A, BioLegend), CCR7 (150503, BD), α4β7 (A4B7, NHP Reagent Resource), LAG3 (3DS223H, eBioscience), Tim-3 (F38-2E2, BioLegend), TIGIT (MBSA43, Invitrogen), CD20 (2H7, BioLegend), CD19 (J3-119, Beckman Coulter), HLA-DR (L243, BioLegend), CD10 (HI10A, BioLegend), CD21 (B-ly4, BD), CD27 (O323, BioLegend), IgD (IADB6, Southern Biotech), IgG (G18-145, BD), IL-21R (2G1-K12, BioLegend), Ki-67 (B56, BD), BCL6 (IG191E/A8, BioLegend), CD80 (2D10, BioLegend), CD56 (B159, BD), CD45 (D058-1283, BD), CD14 (MoP9, BD), CD16 (3G8, BD), CCR2 (48607, R&D Systems), CD11b (ICRF44, BioLegend), CD11c (3.9, Invitrogen), PD-L1 (29E.2A3, BioLegend), PD-L2 (24F.10C12, BioLegend), CD80 (2D10, BioLegend), CD86 (FUN-1, BD), CD141 (1A4, BD), CD163 (GHI/61, BioLegend), and CD123 (7G3, BD).
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4

Isolation and Expression of Antigen-Specific Rhesus Macaque Antibodies

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Cryopreserved rhesus macaque PBMCs were thawed and stained with LIVE/DEAD fixable violet dead cell stain (Life Technologies). After washing, cells were stained with a cocktail of anti-human antibodies, including CD3 (clone SP34–2; BD Biosciences), CD4 (clone OKT4; BioLegend), CD8 (clone RPA-T8; BioLegend), CD14 (clone M5E2; BioLegend), CD20 (clone 2H7; BioLegend), IgG (G18–145; BD Biosciences), and IgM (clone G20–127; BD Biosciences), and with fluorescently labeled trimer probe (BG505 DS-SOSIP.avi) and peptide probe (FP10–1M6T.avi or FP9-PEG12-biotin) (Kong et al., 2016 (link)). Vivid-CD3-CD4-CD8-CD14-CD20+IgG+IgM- memory B cells that are positively stained with both trimer and peptide probes were sorted into 96-well plates containing lysis solution as previously described (Kong et al., 2016 (link)). Nested PCR was performed using published primers (Mason et al., 2016 (link); Sundling et al., 2012 (link)). Heavy and light chain sequences were cloned into expression vectors containing rhesus macaque immunoglobulin constant regions. IgG was expressed by cotransfecting Expi293F™ cells with equal amounts of paired heavy and light chain plasmids and purified using protein A Fast Flow (GE Healthcare) according to the manufacturer’s instructions.
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5

Phenotyping Antigen-Specific B cells

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Freshly isolated peripheral blood mononuclear cells were stained first for viability with Live/dead Yellow (ThermoFisher) and then for markers with the following monoclonal antibodies: IgA (IS11–8E10, Miltenyi), IgD (IA6–2, BD), IgG (G18–145, BD), IgM (MHM-88, Biolegend), CD3 (SK7, BD), CD4 (RPA-T4, BD), CD8 (SK1, BD), CD14 (61D3, eBioscience), CD16 (CB16, eBioscience), CD19 (SJ25C1, BD), CD20 (2H7, BD), CD27 (O323, BioLegend or M-T271, BD), CD38 (HB7, BD), and CD71 (CY1G4, BioLegend. Antigen-specific B cells were detected by staining with RBD conjugated to Alexa Fluor 488 (Protein Labeling Kit, ThermoFisher). RBD was conjugated according to manufacturer’s instructions, with the following changes: protein was labeled at a concentration of 1mg/mL, and incubated for 30 minutes without the addition of bicarbonate. After staining, PBMCs were washed and then fixed for 30 minutes using 2% paraformaldehyde (ThermoFisher). Data were acquired on a BD FACSymphony A5 and analyzed using FlowJo 10.7.1 (BD).
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6

Identifying Dual-Specific Memory B Cells

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FACS analysis of PBMC was performed as described previously (Kong et al., 2019 (link)). Briefly, NHP PBMCs were stained with LIVE/DEAD fixable violet dead cell stain (Life Technologies), washed, and then stained with a cocktail of anti-human antibodies, including CD3 (clone SP34–2; BD Biosciences), CD4 (clone OKT4; BioLegend), CD8 (clone RPA-T8; BioLegend), CD14 (clone M5E2; BioLegend), CD20 (clone 2H7; BioLegend), IgG (G18–145; BD Biosciences), and IgD (Dako, polyclonal), and with fluorescently labeled trimer probe (BG505 DS-SOSIP) for 15 mins, and followed by peptide probe FP9-PEG12-PE for another 15 mins. Stained PBMCs were analyzed on BD LSRFortessa X-50. Vivid−CD3−CD4−CD8−CD14−CD20+IgG+IgD− memory B cells that were positively stained with both trimer and peptide probes were considered FP and trimer dual-specific memory B cells. The analysis of the PBMCs was performed using FlowJo.
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7

Phenotyping SARS-CoV-2-specific B Cells

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Freshly isolated or thawed PBMCs were stained first for viability with LIVE/DEAD Fixable Yellow (Thermo Fisher Scientific) and then for markers with the following mAbs: IgA (IS11-8E10; Miltenyi Biotec), IgD (IA6-2; BD Biosciences), IgG (G18-145; BD Biosciences), IgM (MHM-88; BioLegend), CD3 (SK7, BD Biosciences), CD4 (RPA-T4, BD Biosciences), CD8 (SK1; BD Biosciences), CD14 (61D3; eBioscience), CD16 (CB16; eBioscience), CD19 (SJ25C1; BD Biosciences), CD20 (2H7; BD Biosciences), CD27 (O323; BioLegend or MT271; BD Biosciences), CD38 (HB7; BD Biosciences), and CD71 (CY1G4; BioLegend). Ag-specific B cells were detected by staining with RBD-conjugated to Alexa Fluor 488 (Alexa Fluor 488 Protein Labeling Kit; Thermo Fisher Scientific). RBD was conjugated as previously described.4 (link) After staining, PBMCs were washed and then fixed for 15 min using 2% paraformaldehyde (PFA; Thermo Fisher Scientific). Data were acquired on a BD FACSymphony A5 and analyzed using FlowJo 10.8.0 (BD Biosciences).
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