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6 protocols using ab152146

1

Protein Expression Analysis of Hip Capsule

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Total protein was obtained from AS hip capsule specimens and fibroblasts using RIPA buffer (Beyotime, Shanghai, China). Then the proteins were separated by 10% SDS-PAGE electrophoresis and subsequently transferred onto PVDF membranes, After 2 h of blockage using 5% slim milk, the membranes were incubated with primary antibodies overnight and related secondary antibody for 2 h. The protein blots were visualized with an ECL kit (Beyotime). The antibodies included DKK1 (ab93017), Cyclin D1 (ab226977), c-myc (ab152146), osteocalcin (OCN; ab93876), alkaline phosphatase (ALP; ab224335), Runt-related transcription factor 2 (Runx2; ab23981) and secondary antibody (ab205718), which were offered by Abcam (Cambridge, MA, USA).
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2

Western Blot Analysis of Proteins

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Total proteins from transfected AGS and MKN45 cells were isolated by RIPA buffer (R0010, Solarbio, Beijing, China) and quantified with the BCA protein quantification kit (ab102536, Abcam, Cambridge, UK) in line with the operating instructions. 20 μg protein samples were dissolved and electrically transferred onto a PVDF membrane (IPVH00010, EMD Millipore, Billerica, MA, USA). After blocking with 5% skim milk (D8340, Solarbio) at room temperature for 1 h, the membranes were incubated with primary antibodies against diverse proteins (RAD54B, 1:1000, ab168463; β-catenin, 1:500, ab16051; Axin, 1:1000, ab32197; cmyc, 1:20000, ab152146; MMP-7, 1:1000, ab216631; GAPDH, 1:2500, ab9485; all from Abcam) at 4°C overnight. Subsequently, the membranes were incubated with corresponding secondary antibodies for 2 h at room temperature and visualized by an ECL assay (P0018S, Beyotime, Shanghai, China). The band intensity was determined by ImageJ software (National Institutes of Health, USA).
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3

Western Blotting Procedure for Protein Analysis

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The protein used for Western blotting was extracted using RIPA lysis buffer (Beyotime Biotechnology, Shanghai, P.R. China) supplemented with protease inhibitors (Roche, Guangzhou, P.R. China). The proteins were quantified using the BCA™ Protein Assay Kit (Pierce, Appleton, WI, USA). The Western blot system was established using a Bio-Rad Bis-Tris Gel System according to the manufacturer’s instructions. Primary antibodies against YEATS4 (ab205018), GAPDH (ab128915), phosphorylated β-catenin (p-β-catenin, ab138378), β-catenin (ab6302), Bcl-2 (ab32124), Bax (ab77566), c-Myc (ab152146), CDK6 (ab151247), CDK4 (ab137818), and cyclin D1 (ab137875) (all from Abcam, Cambridge, MA, USA) were prepared in 5% blocking buffer. Primary antibodies were respectively incubated with the membrane at 4°C overnight, followed by wash and incubation with secondary antibodies marked by horseradish peroxidase for 1 h at room temperature. After rinsing, the polyvinylidene difluoride (PVDF) membrane carrying blots and antibodies were transferred into the Bio-Rad ChemiDoc™ XRS System, and then 200 μl of Immobilon Western Chemiluminescent HRP Substrate (Millipore, Billerica, MA, USA) was added to cover the membrane surface.
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4

Western Blot Analysis of Protein Expression

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The proteins were extracted using Nuclear and Cytoplasmic Protein Extraction Kit (Beyotime, Shanghai, P.R. China) and phenylmethanesulfonyl fluoride (PMSF; Beyotime) according to the manufacturer’s protocol. The concentration of proteins was then estimated by BCA™ Protein Assay Kit (Pierce, Appleton, WI, USA). Equivalent proteins were loaded onto 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gels. Thereafter, the proteins were transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA), followed by blocking with 5% skim milk (Nestlé, Shuangcheng, P.R. China). After rinsing, the membranes were incubated at 4°C overnight with primary antibodies against FZD8 (ab155093), cyclin D1 (ab137875), c-Myc (ab152146), β-catenin (ab6302), T-cell transcription factor 4 (TCF-4; ab185736), or GAPDH (ab128915) (all from Abcam, Cambridge, MA, USA). After rinsing again, the membranes were incubated with secondary antibody marked by horseradish peroxidase for 1 h at room temperature. The membranes were washed again and then transferred into the Bio-Rad ChemiDoc™ XRS system, followed by adding 200 μl of Immobilon Western Chemiluminescent HRP Substrate (Millipore) to cover the membrane surface. The signals were captured using Image Lab™ Software (Bio-Rad, Hercules, CA, USA).
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5

Protein Expression Analysis in Transfected Cells

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Transfected cells were lysed on ice with cell lysate to extract total protein. The BCA method was used for protein quantification. The proteins were separated by SDS-PAGE gel electrophoresis, and transferred to PVDF membranes at a constant voltage of 80 V. After blocking with 5% skimmed milk powder TBST at room temperature for 2 h, the membranes were incubated with YTHDF1 (1/500; ab230330; Abcam), Axin2 (1:1000; ab32197; Abcam), c-myc (1:5000; ab152146; Abcam), β-catenin (1:10000; ab81305; Abcam), cyclin D1 (1:10000; ab134175; Abcam), and β-actin (1:5000; ab179467; Abcam) overnight at 4°C. After washing, the membranes were incubated with secondary antibodies at room temperature for 1 h. The color was developed by chemiluminescence, and the gel imaging system was used to analyze images. The gray value of the bands was measured.
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6

Affinity Purification of c-Myc Interactome

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Bacteria were resuspended in 800 μL co-IP lysis buffer (50 mM Tris–HCl, 150 mM NaCl, 5% glycerol, pH 7.4) and 120 μg lysozyme was added. The samples were incubated at 37 °C under shaking at 1400 rpm for 1 h. Afterwards, 8 μL 10% NP-40 solution was added and the bacteria were lysed by ultrasonication (5 × 30 s, 80%, on ice during breaks). The insoluble fraction was pelletized (10 000g, 30 min, 4 °C) and the supernatant was sterile filtered through a 0.2 μm PTFE filter. Protein concentration was determined using a BCA assay (Roti-Quant universal, Carl Roth GmbH + Co. KG). 30 μL Protein A/G agarose beads (Thermo Fisher Scientific) were transferred to protein low-bind microcentrifuge tubes (Eppendorf) and washed with 1 mL co-IP wash buffer (50 mM Tris–HCl, 150 mM NaCl, 5% glycerol, 0.05% NP-40, pH 7.4) and centrifuged for 1 min at 1000g at 4 °C. 500 μg proteome (in 500 μL) and either 1 μL anti-c-Myc antibody (rabbit polyclonal, ab152146, 1 mg mL−1, Abcam) or 0.4 μL rabbit mAb IgG isotype control (2.5 mg mL−1, Cell Signaling Technology, Danvers, United States) were added. The samples were incubated at 4 °C for 3 h under constant rotation. The supernatant was removed after centrifugation (1000g, 1 min, 4 °C), and the beads were washed twice with 1 mL co-IP wash buffer. The detergent was removed by washing the beads twice with co-IP lysis buffer.
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