The largest database of trusted experimental protocols

Cold lysis buffer

Manufactured by Cell Signaling Technology
Sourced in United States

Cold lysis buffer is a reagent designed to facilitate the extraction and solubilization of cellular proteins from biological samples. It is intended to be used at low temperatures to maintain the integrity and activity of the target proteins during the lysis process.

Automatically generated - may contain errors

9 protocols using cold lysis buffer

1

Biomarker Expression in Liver, Serum, and Tumor

Check if the same lab product or an alternative is used in the 5 most similar protocols
Serum, tumor, and liver tissue levels of IL6, HGF and VEGF were determined using an enzyme-linked immunosorbent assay (ELISA) kit according to manufacturer instructions, and as previously described (G.K.) (4 (link), 5 ). Briefly, flash-frozen liver tissue was homogenized in a cold lysis buffer (Cell Signaling Technology Inc., Beverly, MA) consisting of a 0.1% proteinase inhibitor (Sigma-Aldrich, St. Louis, MO). The homogenates were then centrifuged at 14,000 rpm for 20 min at 4°C, and the total protein concentration was determined using BCA. Undiluted serum was used. IL6, HGF and VEGF values were then normalized to protein concentration. All samples and standards were measured in duplicate, and the average value was recorded (pg per mL). ELISA Quantikine kits for IL6 (rat/R6000B), HGF (rat/MHG00) and VEGF (rat/RRV00) were used (R&D Systems, Inc., Minneapolis, MN).
+ Open protocol
+ Expand
2

In Vitro Kinase Assay for c-Jun

Check if the same lab product or an alternative is used in the 5 most similar protocols
Islet pellets were dislodged into cold lysis buffer from Cell Signaling Technologies (CST, USA) supplemented with protease inhibitor cocktail tablets (Roche Applied Science, Basel, Switzerland). The homogenized tissue was sonicated and whole protein extracts were recovered by cold centrifugation (12000× g for 30 min). Protein extracts (50 µg) were incubated for 3 hours at 4°C with a c-Jun (1–79)-GST fusion protein coupled to glutathione beads (1 µg, Sigma Aldrich, Switzerland). After a short centrifugation (900× g for 3 min), the supernatants were discarded, and pellets were washed twice, then mixed to kinase buffer (20 mmol/l HEPES pH 7.5, 20 mmol/l β-glycero-phosphate, 10 mmol/l MgCl2, and 1 mmol/l DTT) and incubated (30 min at 30°C) with 0.5 µl [γ-33]ATP (111 TBq/mmol, PerkinElmer, Switzerland). The reactions were terminated by addition of Laemmli sample buffer (50 mmol/l Tris-HCl pH 6.8, 2% [w./vol.] SDS, 100 mmol/l DTT, 0.1% [w./vol.] bromophenol blue and 10% [vol./vol.] glycerol. GST-c-Jun phosphorylation was resolved by SDS-PAGE, (BIO-RAD, Switzerland) and then, gels were fixed, dried and exposed overnight to X-ray film. The protein band intensities were quantified by densitometric analysis using the ImageJ processing software.
+ Open protocol
+ Expand
3

NRG1 Stimulation Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
For Western blot analysis, 5 x 106 Ba/F3 cells were washed three times in PBS, left 60 minutes with only RPMI-1640 medium supplemented with 10% FCS and then incubated with 100 ng/mL NRG1 (Peprotech) for 30 minutes. Total cell lysates were obtained by lyzing cells in cold lysis buffer (Cell Signaling Technology) supplemented with complete protease inhibitor tablets (Roche). Thirty microgram of protein lysate was combined with SDS loading buffer plus DTT (Cell Signaling Technology) before electrophoresis on 4–12% NUPAGE gels (Invitrogen) and the proteins were transferred to nitrocellulose membranes. Antibodies used were as follows: anti-ERBB3 (sc-285; Santa Cruz Biotechnology), anti-phospho-ERBB3 (AF5817; R&D Systems) anti-ERBB4 (#4795; Cell Signaling Technology), anti-phospho-ERBB4 (#4757; Cell Signaling Technology), anti-Akt (#9272; Cell Signaling Technology), anti-phospho-Akt (#4060S; Cell Signaling Technology), anti-MEK (#9126; Cell Signaling Technology), anti-phospho-MEK (#9154; Cell Signaling Technology) and anti-rabbit peroxidase-labeled antibodies (AP Biotech, Uppsala, Sweden). The LAS-3000 Imaging System (Fujifilm Global) was used for detection.
+ Open protocol
+ Expand
4

Quantifying IL-6 and VEGF in Mouse/Rat Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Serum and tissue levels of IL-6 (Mouse/M6000B and Rat /R6000B Quantikine kit, R&D Systems Inc., Minneapolis, MN) and VEGF (Rat/RRV00 Quantikine kit, R&D Systems) were determined using an enzyme-linked immunosorbent assay (ELISA) kit according to manufacturer’s instructions. Briefly, flash-frozen liver tissue was homogenized in a cold lysis buffer (Cell Signaling Technology Inc., Beverly, MA) consisting of a 0.1% proteinase inhibitor (Sigma-Aldrich). The homogenates were then centrifuged at 14,000 rpm for 20 min at 4°C, and the total protein concentration was determined using a bichinchoninic acid method (BCA) (Sigma-Aldrich). Undiluted serum was used. IL6 and VEGF values were then normalized to protein concentration. All samples and standards were measured in duplicate, and the average value was recorded as pg per mL [37 (link),38 (link)].
+ Open protocol
+ Expand
5

Protein Analysis from Cell Lysates

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were treated as indicated. Cells were then washed twice with cold PBS and lysed with cold lysis buffer (Cell Signaling) as described (12 (link)). The supernatant was resuspended in equal volume of 2× Laemmli sample buffer (Cell Signaling) and resolved by SDS-PAGE followed by immunoblotting with antibodies as indicated. The protein bands were visualized using ECL reagent (GE Healthcare, Piscataway NJ) using FluroChem HD2 system (Alpha Tech, Burlington MA).
+ Open protocol
+ Expand
6

Western Blot Analysis of Transduced Cell Fractions

Check if the same lab product or an alternative is used in the 5 most similar protocols
FACS-isolated transduced (eGFP+) and mock-transduced (eGFP-) fractions were lysed with cold lysis buffer (Cell Signaling Technologies) containing protease inhibitors (Sigma). Protein was quantified via BCA assay (Thermo Scientific). 5μg of protein was denatured with Laemmli sample buffer at 95°C for 5 minutes and run on mini protean TGX gels (BioRad). Transfers were performed using the Transblot Turbo Transfer System (BioRad) and Transblot Turbo Transfer Packs (BioRad). Membranes were washed with 1X TBST, blocked with 5% milk in TBST for 1 hour, and incubated with primary antibody (rabbit anti-human LYP (clone D6D1H), β-actin (polyclonal) or GFP (clone D5.1), Cell Signaling Technologies) overnight at 4°C. Membranes were then washed with TBS-T, and incubated with anti-rabbit IgG-HRP secondary antibody (1:1000, Cell Signaling Technologies) for 1 hour at room temperature. Membranes were subsequently washed, developed with Western DuraSignal Substrate (Thermo Scientific), and imaged on the GeneGnome XRQ (Syngene). Western blot band quantification was performed in ImageJ (48 (link)). Serial blots were stripped with Restore Western Blot Stripping Buffer (ThermoFisher Scientific) between probes for 15 minutes at room temperature per manufacturer protocol.
+ Open protocol
+ Expand
7

Splenic B Cell R848 Stimulation Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
After stimulation of splenic bee cells with 1 mg/ml of R848 for indicated times, cells were washed with cold PBS and lysed with cold lysis buffer (Cell signaling Technology) supplemented with Halt’s protease and phosphatase inhibitors (Thermo Fisher Scientific). Total protein was determined using Pierce BCA protein assay kit. pIRAK4 and pIRAK1 antibodies were generated at Genentech [52 (link)], and all other antibodies, including p-IκBα, p-p65 NFκB, p-p38 and p-JNK, actin, and anti-rabbit IgG–HRP linked antibody were purchased from Cell Signaling Technology. Detection was done using SignalFire™ ECL chemiluminescence substrate from Cell Signaling Technology.
+ Open protocol
+ Expand
8

Cellular Protein Quantification for Cytotoxicity

Check if the same lab product or an alternative is used in the 5 most similar protocols
In addition to the LDH assay, the measurement of total cellular protein level by the BCA assay was used as another method to determine cytotoxic effects of cement specimens after 24 h. Thus, after media were removed from wells, cells were carefully washed twice with cold PBS. Then, 100-µl cold lysis buffer (Cell Signaling Technologies) with proteinase inhibitors (Sigma-Aldrich) was added to cells, and plates were transferred on ice for 10 min. Subsequently, cell lysates were transferred to microtubes and centrifuged for 10 min at 14,000 × g in a cold microfuge. Resulting supernatants were directly used for the BCA assay (Pierce BCA Protein Assay Kit, Thermo Fisher Scientific) as recommended in the manufacturer’s protocol. Cell viability was calculated by dividing total protein content of control cells (=100% cell viability) through total protein content of cement-specimen-treated cells.
+ Open protocol
+ Expand
9

VSVG Immunoprecipitation and Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Caco-2bbe/NHE3 cells were lysed in cold lysis buffer (Cell Signaling) containing 150 mM NaCl, 1 mM ß-glycerophosphate, 2.5 mM sodium pyrophosphate, 1 mM Na2EDTA, 1 mM EGTA, 1 mM Na3VO4, 1 μg/ml leupeptin, 1% Triton X-100, and protease inhibitors cocktail tablets (Roche, Indianapolis, IN). Lysate (500 μg) was pre-cleared by incubation with 30 µl of protein A-Sepharose beads for 1 h and the supernatant was then incubated overnight with anti-VSVG P5D4 antibodies. Immunocomplex was purified by incubating with 50 µl of protein A-Sepharose beads for 1 h, followed by three washes in lysis buffer and two washes in PBS. All the above steps were performed at 4 C or on ice. Beads were eluted with 2.5X Laemmli buffer. Cell lysates and eluted samples were separated by SDS-PAGE. Western immunoblotting was performed as previously described (No et al., 2014 (link)) and visualization were performed using the LICOR Odyssey Imaging System (Li-COR corp, Lincoln, NE). Densitometric analysis was performed using ImageJ software (National Institutes of Health).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!