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Nanozoomer digital pathology view software

Manufactured by Hamamatsu Photonics
Sourced in Japan

The NanoZoomer Digital Pathology (NDP) View software is a digital imaging platform developed by Hamamatsu Photonics. The software is designed to view and manage digital slide images captured using Hamamatsu's NanoZoomer series of slide scanners. The NDP View software provides tools for viewing, annotating, and analyzing digital slides, enabling efficient digital pathology workflows.

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2 protocols using nanozoomer digital pathology view software

1

Histopathological Analysis of Pancreatic Lesions

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All pancreata were analyzed in blinded fashion. Pancreases were fixed in 10% neutral-buffered formalin and embedded in paraffin. For histopathological analysis, pancreata were serially sectioned (4 μm), and every five sections were stained with hematoxylin and eosin (H&E). Histopathological scoring of pancreatic lesions was performed using serial H&E-stained sections (100 μm apart, three sections per pancreas). One representative slide per mouse was imaged using a Hamamatsu Nanozoomer 2 slide scanner (Hamamatsu Photonics), ADM/PanIN lesions were counted, and the damaged pancreatic tissue, ADM, or PanIN area was measured on the entire section with the Nanozoomer Digital Pathology view software (Hamamatsu).
Immunostainings were conducted using standard methods on formalin-fixed, paraffin-embedded tissues. Antigen retrieval and antibody dilution were carried out as described in the Supplemental Material. All phospho-specific antibodies were revealed using a Cell Signaling Signal Boost system followed by AEC or DAB incubation. Corresponding blocking phosphopeptide (Cell Signaling Technologies) and λ-phosphatase (New England Biolabs) treatments were used for validation of antibody specificity. For immunofluorescence, a Zeiss LSM780 confocal microscope was used.
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2

Histological Analysis of Rat and Mouse Colons

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Flushed colons of rats and mice were opened longitudinally and cut into 2-cm sections. The samples were fixed in 4% paraformaldehyde (4 h, room temperature), dehydrated, and embedded in paraffin, according to standard histological protocols. Four-micrometer thick sections of rat distal colon (proximal, median, and distal for mice) were mounted on SuperFrost® Plus slides (Thermo Fisher, Waltham, MA, United States). Paraffin-embedded sections were deparaffinized and stained with Hematoxylin and Alcian blue (AB) solution pH 2.5 to count the number of total and goblet cells per crypt, respectively. MUC2 immunostaining was performed for rats using the EnVision + System-HRP (Dako-Cytomation, Trappes, France) and anti-MUC2 antibody (1:5000; sc-15334, Santa Cruz Biotechnology, Heidelberg, Germany), as previously described (Tomas et al., 2013 (link)). Only U-shaped longitudinally cut crypts with open lumina were counted. The reported results are the means obtained by analysis of at least 10 crypts per site using Nanozoomer Digital Pathology view software (Hamamatsu Photonics, Hamamatsu, Japan).
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